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Plasmids Python Packages

Python packages with the GitHub topic plasmids. Sorted by relevance, with stars and monthly downloads.
oschwengers
bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

3K 642 79
Lattice-Automation
synbio

a DNA assembly library

2K 23 2
phac-nml
mob-suite

MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies

736 174 33
althonos
moclo

A Python implementation of the MoClo system logic.

481 12 2
koeng101
dnadesign

Python bindings for dnadesign

481 38 1
oschwengers
cb-platon

Platon: identification and characterization of bacterial plasmid contigs from short-read draft assemblies.

449 121 15
smaegol
plasflow

PlasFlow - predicting plasmid sequences in metagenomic data

371 111 28
althonos
moclo-ytk

Modular cloning simulation with the MoClo framework in Python

230 12 2
althonos
moclo-ecoflex

Modular cloning simulation with the MoClo framework in Python

199 12 2
althonos
moclo-cidar

Modular cloning simulation with the MoClo framework in Python

192 12 2
yachielab
python-queen

QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources

158 46 9
oschwengers
tadrep

Targeted Detection and Reconstruction of Plasmids

141 22 1
th0mr
plasmidcanvas

A simple python plasmid map creator

96 4 1
erinyoung
minkemap

A Python-based Circular Genome Visualization Tool

80 3 0
erinyoung
refseq-plasmid-dl

A command-line tool to download and curate RefSeq plasmid sequences from NCBI.

74 2 0
pianpianyouche
plascad

Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasmid visualization.

73 52 13
tiagofilipe12
plasmiduncover

Script to obtain plasmid id from WGS data using bowtie2 to map

61 1 1
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