Plasmids Python Packages

bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

3K 642 79

synbio

a DNA assembly library

2K 23 2

mob-suite

MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies

736 174 33

moclo

A Python implementation of the MoClo system logic.

481 12 2

dnadesign

Python bindings for dnadesign

481 38 1

cb-platon

Platon: identification and characterization of bacterial plasmid contigs from short-read draft assemblies.

449 121 15

plasflow

PlasFlow - predicting plasmid sequences in metagenomic data

371 111 28

moclo-ytk

Modular cloning simulation with the MoClo framework in Python

230 12 2

moclo-ecoflex

Modular cloning simulation with the MoClo framework in Python

199 12 2

moclo-cidar

Modular cloning simulation with the MoClo framework in Python

192 12 2

python-queen

QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources

158 46 9

tadrep

Targeted Detection and Reconstruction of Plasmids

141 22 1

plasmidcanvas

A simple python plasmid map creator

96 4 1

minkemap

A Python-based Circular Genome Visualization Tool

80 3 0

refseq-plasmid-dl

A command-line tool to download and curate RefSeq plasmid sequences from NCBI.

74 2 0

plascad

Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasmid visualization.

73 52 13

plasmiduncover

Script to obtain plasmid id from WGS data using bowtie2 to map

61 1 1