Plasmids Python Packages

bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

2K 661 82

mob-suite

MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies

713 179 33

synbio

a DNA assembly library

657 23 2

dnadesign

Python bindings for dnadesign

532 38 1

moclo

A Python implementation of the MoClo system logic.

412 11 2

cb-platon

Platon: identification and characterization of bacterial plasmid contigs from short-read draft assemblies.

375 122 15

moclo-ecoflex

EcoFlex implementation for the base moclo library.

247 11 2

plasflow

PlasFlow - predicting plasmid sequences in metagenomic data

235 111 27

moclo-ytk

Yeast ToolKit implementation for the base moclo library.

235 11 2

moclo-cidar

CIDAR implementation for the base moclo library.

235 11 2

tadrep

Targeted Detection and Reconstruction of Plasmids

158 22 1

python-queen

QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources

136 48 10

minkemap

A Python-based Circular Genome Visualization Tool

132 3 0

plasmidcanvas

A graphics package for creating customised plasmid maps

122 4 1

refseq-plasmid-dl

A command-line tool to download and curate RefSeq plasmid sequences from NCBI.

110 2 0

plasmiduncover

Script to obtain plasmid id from WGS data using bowtie2 to map

91 1 1

plascad

Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasmid visualization.

73 52 12