Plasmids Python Packages

bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

2K 683 87

synbio

a DNA assembly library

812 23 2

mob-suite

MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies

591 187 34

dnadesign

A lua package for designing DNA.

439 38 1

cb-platon

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

362 130 16

moclo

Modular cloning simulation with the MoClo framework in Python

306 11 2

moclo-ytk

Modular cloning simulation with the MoClo framework in Python

151 11 2

moclo-ecoflex

Modular cloning simulation with the MoClo framework in Python

125 11 2

moclo-cidar

Modular cloning simulation with the MoClo framework in Python

120 11 2

tadrep

Targeted Detection and Reconstruction of Plasmids

102 22 1

plasflow

Software for prediction of plasmid sequences in metagenomic assemblies

98 111 27

plasmidcanvas

A simple python plasmid map creator

90 4 1

refseq-plasmid-dl

Downloads plasmids from refseq ftp

69 2 0

python-queen

QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources

67 48 11

minkemap

A Python-based Circular Genome Visualization Tool

58 5 0

plasmiduncover

Script to obtain plasmid id from WGS data using bowtie2 to map

53 1 1

plascad

Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasmid visualization.

50 52 12