Piaso Python Packages

piaso-tools

PIASO: Precise Integrative Analysis of Single-cell Omics

laris

LARIS maps ligand-receptor signalling in spatial transcriptomics within and across tissue states

cytome

Single-file format for single-cell multi-omics and spatial transcriptomics — matrices, metadata, embeddings, fragments and provenance in one SQLite-backed .cytome file, with SQL metadata queries and genomic range indexes.

piaso-mcp

Agent-neutral knowledge hub that makes the PIASO single-cell omics ecosystem (PIASO, COSG/COSGR, LARIS, Emergene, PIASOmarkerDB) first-class for any coding agent. One canonical source generates Claude skills, Cursor rules, AGENTS.md, llms.txt, and an MCP server.

cosg

Accurate and fast cell marker gene identification with COSG

cytorete

Cell-type-resolved gene regulatory network inference from single-cell data.