PyRank

Phylogeny Python Packages

Python packages with the GitHub topic phylogeny. Sorted by monthly downloads, with stars and forks.
emilydolson
phylotrackpy

Python phylogeny tracker for in silico evolution experiments

9K 12 2
agormp
phylotreelib

Library for analyzing and manipulating phylogenetic trees

2K 16 2
theosanderson
taxoniumtools

A tool for exploring large trees in the browser

2K 134 29
agormp
sumt

Computes consensus trees and other phylogenetic tree summaries

2K 3 0
ZengZichao
figtreekit

Programmatic styling of phylogenetic trees for FigTree visualization

1K 2 0
prophyle
prophyle

ProPhyle metagenomic classifier

768 38 5
hk20013106
phylo3d-trait

Interactive 3D phylogenetic visualization of continuous trait evolution and supplied ancestral-state estimates

733 1 0
bioconvert
bioconvert

convert between bioinformatics formats

650 394 46
biocore
empress

Fast and scalable phylogenetic tree viewer for multi-omic data analysis

492 56 32
alexander-pv
pyiwe

Python wrapper for TNT (Tree analysis using New Technology) implied weighting with clades support

112 2 0
agormp
treedist

Computes measures of (dis)similarity between phylogenetic trees. Provides summaries of shared and unique bipartitions.

68 1 0
kullrich
oggmap

extract orthologous maps (short: orthomap) from OrthoFinder output for query species

57 4 0