Phylogeny Python Packages

phylotrackpy

Python phylogeny tracker for in silico evolution experiments

taxoniumtools

A tool for exploring large trees in the browser

phylotreelib

Library for analyzing and manipulating phylogenetic trees

sumt

Computes consensus trees and other phylogenetic tree summaries

bioconvert

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

prophyle

Accurate, resource-frugal and deterministic DNA sequence classifier.

empress

Fast and scalable phylogenetic tree viewer for multi-omic data analysis

pyiwe

Python wrapper for TNT (Tree analysis using New Technology) implied weighting with clades support

treedist

Computes measures of (dis)similarity between phylogenetic trees. Provides summaries of shared and unique bipartitions.

oggmap

extract orthologous maps (short: orthomap) from OrthoFinder output for query species