Phylogeny Python Packages

phylotrackpy

Python phylogeny tracker for in silico evolution experiments

taxoniumtools

A tool for exploring large trees in the browser

sumt

Computes consensus trees and other phylogenetic tree summaries

phylotreelib

Analyze and manipulate phylogenetic trees

prophyle

Accurate, resource-frugal and deterministic DNA sequence classifier.

bioconvert

convert between bioinformatics formats

empress

Fast and scalable phylogenetic tree viewer for multi-omic data analysis

pyiwe

Python wrapper for TNT (Tree analysis using New Technology) implied weighting with clades support

treedist

Computes measures of (dis)similarity between phylogenetic trees. Provides summaries of shared and unique bipartitions.

oggmap

extract orthologous maps (short: orthomap) from OrthoFinder output for query species