Phenotype Python Packages

magenpy

Modeling and Analysis of (Statistical) Genetics data in python

pypgx

A Python package for pharmacogenomics (PGx) research

ontoloviz

GUI for drug and phenotype ontology visualization

iderare-pheno

IDeRare Phenotype Analysis suite : Convert Indonesia SATUSEHAT terminology (SNOMED-CT, LOINC, ICD-10) to Rare Disease Terminology / Ontology (HPO, OMIM) and find the likelihood differential gene and disease explaining patient phenotype

phenotopo

A QC and explainability toolkit for phenotype cohorts: HPO/Phenopacket quality control, annotation-bias checks, outliers, ontology-aware group comparison and robust cohort structure.

phenoverse

Deep interpretable learning of sample representations for characterizing disease states in single-cell transcriptomics

meisterinsitu

InSituAnalyzeV1.0-OSP