phasing
nPhase is a command line ploidy agnostic phasing pipeline and algorithm which phases samples of any ploidy with sequence alignment of long and short read data to a reference sequence.
Python library for simple and complex indels
GWAS QC, PCA, haplotype phasing, genotype imputation
a python program to stitch the ReadBack phased haplotypes in F1 hybrids.
A phasing and imputation pipeline for NGS data
pitools: A python program for phasing and imputation NGS data.
