phage
PHANOTATE: a gene caller for phages.
MobiOrigin classifies bacterial contigs as plasmid, chromosome, phage, or unclassified using sequence, coding and mobility-marker evidence.
Phigaro is a scalable command-line tool for predicting phages and prophages
Phage-focused genome annotation and comparative genomics workflow integrating structural gene prediction, evidence-supported functional annotation, and INPHARED nearest-phage analysis.
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
