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Perturb Seq Python Packages

Python packages with the GitHub topic perturb-seq. Sorted by monthly downloads, with stars and forks.
dnncha
dotmatch

Fast exact short-DNA known-target assignment for CRISPR guides, barcodes, primers, panels, and whitelists.

7K 1 0
scverse
pertpy

Single-cell perturbation analysis

6K 347 67
broadinstitute
pysceptre

Standalone Python port of the statistical engine behind sceptre's discovery analysis for single-cell CRISPR screens.

1K 1 0
Hon-lab
pyspade

Single cell Perturbations - Analysis of Differential gene Expression

162 9 0
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