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Persistent Homology Python Packages

Python packages with the GitHub topic persistent-homology. Sorted by relevance, with stars and monthly downloads.
scikit-tda
ripser

A Lean Persistent Homology Library for Python

69K 333 62
GUDHI
gudhi

The GUDHI library is a generic open source C++ library, with a Python interface, for Topological Data Analysis (TDA) and Higher Dimensional Geometry Understanding.

54K 312 86
shizuo-kaji
cripser

Persistent homology calculation for 1D (scalar time series), 2D (image), and 3D, 4D (voxel) arrays

16K 67 9
DavidLapous
multipers

Python library for multiparameter persistence

13K 40 8
giotto-ai
pyflagser

Python bindings and API for the flagser C++ library (https://github.com/luetge/flagser).

10K 16 19
scikit-tda
pervect

Vectorization of persistence diagrams and approximate Wasserstein distance

3K 28 0
TeaspoonTDA
teaspoon

A Topological Signal Processing Package

2K 44 11
tomchaplin
lophat

Lockfree Persistent Homology Algorithm Toolkit

2K 6 1
Chege-N
topoconscious

Persistent homology pipeline for detecting neural correlates of consciousness from fMRI — H0/H1/H2, Wasserstein + Müller-Lyer timelines, HMM decoding, topological transfer entropy.

2K 0 0
mvlier
topapprox

Package for computing topological approximation using Persistent Homology in various settings.

820 7 1
OnDraganov
chromatic-tda

Tool to compute six-packs of persistence diagrams for chromatic point clouds

772 19 2
marrlab
shapr-torch

SHAPR: Code for "Capturing Shape Information with Multi-Scale Topological Loss Terms for 3D Reconstruction"

208 41 7
merylldindin
topologyx

Topological Data Analysis Routines

187 150 30
oleg-kachan
diagram2vec

Vector Representations of Persistence Diagrams

120 6 2
mvlier
topsimp

Package for computing topological approximation using Persistent Homology in various settings.

64 7 1
Steenroder
steenroder

Computation of persistence Steenrod barcodes

56 9 0
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