Peptide Python Packages

synth-pdb

Generate realistic PDB files with mixed secondary structures for testing, education and bioinformatics tool development

biobase

A comprehensive package of biological constants, serving as a foundational resource for biology and bioinformatics, complemented by functions to streamline related tasks.

protgraph

ProtGraph - A Graph-Generator for Proteins

peplink

Peptide <-> SMILES utilities for monomer peptides with non-canonical residues, terminal modifications, and selected cyclizations.

labmate-mcp

Your AI lab companion — 78 MCP tools for literature, compounds, synthesis, benchwork, peptides & publication writing

psimodpy

Python library + API + MCP for PSIMOD post-translational modification (PTM) controlled vocabulary.

unimodpy

Python library + API + MCP for UNIMOD post-translational modification (PTM) controlled vocabulary.

uniprotptmpy

Python library + API + MCP for UniProt post-translational modification (PTM) controlled vocabulary.

pepid

Pepid: a Highly Modifiable, Bioinformatics-Oriented Peptide Search Engine