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Peak Caller Python Packages

Python packages with the GitHub topic peak-caller. Sorted by monthly downloads, with stars and forks.
macs3-project
macs3

MACS -- Model-based Analysis of ChIP-Seq

18K 787 274
macs3-project
macs2

MACS -- Model-based Analysis of ChIP-Seq

7K 787 274
nolan-h-hamilton
rocco

Robust Open Chromatin Detection via Convex Optimization: Multisample Consensus Peak Calling

4K 11 0
endrebak
bioepic

(DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER

574 31 6
Boyle-Lab
fseq2

Improving the feature density based peak caller with dynamic statistics

144 7 1
    • Original data from PyPI, GitHub, and OSV; downloads served through ClickHouse
    • Sources & methodology