Pdb Python Packages

pdbr

pdb + Rich library

8.9M 352 15

pdbp

pdbp (Pdb+): A drop-in replacement for pdb and pdbpp. To replace "pdb", add "import pdbp" to an "__init__.py" file.

830K 114 6

remote-pdb

Remote vanilla PDB (over TCP sockets).

792K 304 29

pdbeccdutils

A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dictionary, uses RDKit

307K 81 12

pytest-pudb

Pytest PuDB debugger integration

49K 62 15

pdb-tools

A dependency-free cross-platform swiss army knife for PDB files.

36K 456 121

hbat

HBAT 2: A Python Package to analyse Hydrogen Bonds and Other Non-covalent Interactions in Macromolecular Structures

32K 10 2

biopandas

Working with molecular structures in pandas DataFrames

29K 753 118

madbg

A fully-featured remote and preemptive debugger for python

28K 307 8

rmsd

Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format

24K 575 121

cpdb-protein

Cython implementation of PDB -> DataFrame parsing

21K 34 1

pyjess

Cython bindings and Python interface to Jess, a 3D template matching software for protein structures. Now 10x faster!

10K 11 0

pdbecif

A lightweight pure python package for reading, writing and manipulating mmCIF files distributed by the wwPDB"

5K 38 4

pypdb

A Python API for the RCSB Protein Data Bank (PDB)

5K 335 76

plip

Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Schake, Bolz, et al. (2025), https://doi.org/10.1093/nar/gkaf361

4K 696 139

tcren

Predicting TCR antigen recognition using statistical potentials

3K 26 4

rna-tools

🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online

3K 185 47