Pbs Python Packages

adaptive-scheduler

Run many functions (adaptively) on many cores (>10k-100k) using mpi4py.futures, ipyparallel, loky, or dask-mpi. :tada:

dpdispatcher

generate HPC scheduler systems jobs input scripts and submit these scripts to HPC systems and poke until they finish

pystand

Command line tool to install pre-built Python versions from the python-build-standalone project

loon

A Python toolkit for operating remote host based on SSH

gravityspawner

A spawner for JupyterHub to let user adjust resources

experi

An interface for managing computational experiments with many independent variables.

pbs-generator

A PBS script generator

orthoevol

This package aids in the analysis of orthologous genes.

batch4py

A lightweight interface to batch schedulers.

tq1

Zero-Config Single-Node Workload Manager

qiime-tools

Tools for phylogenetic data analysis including visualization and cluster-computing support.

clientapi-pbs

Proxmox Backup Server API

datasnakes

This package helps in the analysis of orthologous genes.

qtop

qtop (pronounced queue-top) is a tool written in order to monitor the state of Queueing Systems, along with related information relevant on HPC & related clusters. It supports **SLURM, PBS, SGE & OAR** families. It is the evolution of the historic shell version of the tool, born out of CERN's LHC project needs:

pyqueue

A declarative python library for generating and submittingjobs to different queueing systems e.g. Slurm, Torque, etc.

phylotoast

Tools for phylogenetic data analysis including visualization and cluster-computing support.

ppbs

Python API for PBS HPC job submission