PyRank

Pathway Analysis Python Packages

Python packages with the GitHub topic pathway-analysis. Sorted by relevance, with stars and monthly downloads.
Net-Zero-Horizon
esfex

Integrated framework for Energy System modelling

7K 2 0
reactome
reactome2py

python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.

4K 36 11
compath
compath-utils

A utilities package for ComPath

877 0 0
DrMSAbdullahi
genpath-pph

Gene expression and KEGG pathway network integration using Persistent Path Homology

601 0 0
cwieder
sspa

Single sample pathway analysis tools for omics data

586 15 6
bio2bel
bio2bel-msig

Integration of pathway-related information from MSigDB in BEL

433 2 0
compath
compath-resources

ComPath Resource Utilities

362 9 1
cwieder
pathintegrate

PathIntegrate: multivariate modelling approaches for pathway-based muti-omics integration

339 19 1
krassowski
gsea-api

Pandas API for Gene Set Enrichment Analysis in Python (GSEApy, cudaGSEA, GSEA)

330 16 2
PathwayMerger
pathme

Harmonizing pathway databases using Biological Expression Language (BEL)

302 20 2
ComPath
compath

A web application for exploring and comparing the overlaps across pathway resources

281 13 0
Micromeda
pygenprop

A python library for programmatic usage of EBI InterPro Genome Properties.

193 9 5
PathwayMerger
pathme-viewer

A plugin for PathMe that allows to explore overlaps across pathway databases

187 6 2
jsmccabe1
sceptr-profiling

Statistical Characterisation of Expression Profiles in Transcriptomes

167 5 0
ComPath
compath-hgnc

A package that wraps PyHGNC to perform mappings between different gene identifiers

165 0 0
LucasESBS
scvega

VEGA: VAE Enhanced by Gene Annotations

154 18 2