Pathology Image Python Packages

deepliif

Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]

dogsled

Macenko normalisation of big medical slides

panoptes-he

A multi-resolution CNN to predict cancer histopathologic features

compay-syntax

:microscope: Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.

tissueloc

Localize the tissue regions in whole slide pathology images.

python-patho

Python library for pathology image analysis