PyRank

Pathogen Python Packages

Python packages with the GitHub topic pathogen. Sorted by monthly downloads, with stars and forks.
sanger-pathogens
pyfastaq

Python3 scripts to manipulate FASTA and FASTQ files

4K 73 21
sanger-pathogens
ariba

Antimicrobial Resistance Identification By Assembly

829 187 60
sanger-pathogens
circlator

A tool to circularize genome assemblies

551 258 57
sanger-pathogens
iva

de novo virus assembler of Illumina paired reads

272 58 18
ccdmb
catastrophy

CATAStrophy predicts filamentous plant pathogen lifestyle characteristics based on their CAZyme composition.

163 6 0
ChongLC
uniqmin

An alignment-independent tool for the study of pathogen sequence diversity

151 7 2
andrewjpage
tiptoft

Predict plasmids from uncorrected long read data

109 41 10
quadram-institute-bioscience
albatradis

Comparative TraDIS analysis

109 9 4
sanger-pathogens
seroba

k-mer based Pipeline to identify the Serotype from Illumina NGS reads

85 27 20
Shylock-Hg
viman

Plugin manager of vim.

66 3 0
andrewjpage
plasmidpredictor

Predict plasmids from uncorrected long read data

37 41 10