PyRank

Pathogen Python Packages

Python packages with the GitHub topic pathogen. Sorted by relevance, with stars and monthly downloads.
sanger-pathogens
pyfastaq

Python3 scripts to manipulate FASTA and FASTQ files

3K 73 21
sanger-pathogens
ariba

Antimicrobial Resistance Identification By Assembly

1K 186 60
sanger-pathogens
circlator

circlator: a tool to circularise genome assemblies

425 257 57
ccdmb
catastrophy

CATAStrophy predicts filamentous plant pathogen lifestyle characteristics based on their CAZyme composition.

337 6 0
sanger-pathogens
iva

Iterative Virus Assembler

331 58 19
ChongLC
uniqmin

An alignment-independent tool for the study of pathogen sequence diversity

230 7 2
quadram-institute-bioscience
albatradis

Comparitive transposon mutagenesis experiment analysis

222 9 4
andrewjpage
tiptoft

Predict plasmids from uncorrected long read data

180 41 10
Shylock-Hg
viman

Plugin manager of vim.

170 3 0
andrewjpage
plasmidpredictor

Predict plasmids from uncorrected long read data

152 41 10
sanger-pathogens
seroba

k-mer based Pipeline to identify the Serotype from Illumina NGS reads

101 25 20