PyRank

Pathogen Python Packages

Python packages with the GitHub topic pathogen. Sorted by relevance, with stars and monthly downloads.
sanger-pathogens
pyfastaq

Python3 scripts to manipulate FASTA and FASTQ files

4K 73 21
sanger-pathogens
ariba

ARIBA: Antibiotic Resistance Identification By Assembly

1K 187 60
sanger-pathogens
circlator

A tool to circularize genome assemblies

641 256 57
ccdmb
catastrophy

A fungal trophy classifier based on CAZymes

265 6 0
sanger-pathogens
iva

de novo virus assembler of Illumina paired reads

262 58 19
ChongLC
uniqmin

An alignment-independent tool for the study of pathogen sequence diversity

218 7 2
Shylock-Hg
viman

Plugin manager of vim.

211 3 0
andrewjpage
tiptoft

Predict plasmids from uncorrected long read data

180 41 10
quadram-institute-bioscience
albatradis

Comparative TraDIS analysis

176 9 4
sanger-pathogens
seroba

k-mer based Pipeline to identify the Serotype from Illumina NGS reads

98 25 20
andrewjpage
plasmidpredictor

Predict plasmids from uncorrected long read data

82 41 10