pasef
An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.
Python reader for Bruker timsTOF (.d) data: DDA/DIA/PRM, fast centroiding and noise filtering
Extract MS/MS spectra from Bruker timsTOF .d folders and convert them to MS2, MGF, or mzML.