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Particle Picking Python Packages

Python packages with the GitHub topic particle-picking. Sorted by monthly downloads, with stars and forks.
tbepler
topaz-em

Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.

897 219 75
MPI-Dortmund
tomotwin-cryoet

cryo-ET particle picking by representation and metric learning

435 47 11
jmarsil
pygempick

Open Source python module to enable batch gold particle picking, filtering, processing & statistical modelling of TEM images produced by IGEM (immunogold electron microscopy).

161 2 0
ShkolniskyLab
kltpicker

KLT picker: Particle picking using data-driven optimal templates (Python version)

146 7 0
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