Pangenome Python Packages

ppanggolin

Build a partitioned pangenome graph from microbial genomes

superpang

Non-redundant pangenome assemblies from multiple genomes or bins

pypangraph

A bioinformatic toolkit to align genome assemblies into pangenome graphs

strainflair

StrainFLAIR (STRAIN-level proFiLing using vArIation gRaph) is a tool for strain identification and quantification that uses variation graph representation of genes sequences

pangbank-cli

Command-line tool for retrieving pangenomes using the PanGBank API.

panqc

Package & software for analysis of nucleotide redundancy within CDS-based pan-genome analyses

panphlan

PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples

gfatypes

Library to parse, edit and handle in memory GFA graphs