Pangenome Python Packages

ppanggolin

Build a partitioned pangenome graph from microbial genomes

pypangraph

A bioinformatic toolkit to align genome assemblies into pangenome graphs

pangbank-cli

Command-line tool for retrieving pangenomes using the PanGBank API.

superpang

Non-redundant pangenome assemblies from multiple genomes or bins

strainflair

Strain-level abundances estimation in metagenomic samples using variation graphs

panqc

A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses

parmmosahn

PaRMMoSaHN - Pangenome Reference-based Metabolic Modelling by Saving Homolog Networks

panphlan

PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples

gfatypes

Library to parse, edit and handle in memory GFA graphs