oxford-nanopore
Long read based human genomic structural variation detection with cuteSV
RNN based assembly HELEN. It works paired with MarginPolish.
CLI tool for flexible and fast adaptive sampling on ONT sequencers
De novo construction of isoforms from long-read data
Wrapper to read fast5 and pod5 files.
De novo clustering of long transcript reads into genes
swan is a tool for visualizing and analyzing transcript isoforms
PEPPER-Margin-DeepVariant
High-performance dual barcode and primer demultiplexer for MinION sequenced reads, optimized for fungal DNA barcoding.
Quality control plotting for long reads
Predict plasmids from uncorrected long read data
preqclr is a software tool that reports on quality for long read sequencing data without the use of a reference genome.
