Orthology Python Packages

phylopypruner

Tree-based orthology inference with functionality for reducing contamination

fdog

Feature-aware Directed OrtholoG search tool

fastoma

FastOMA is a scalable software package to infer orthology relationship.

bio2bel-entrez

A package for parsing and storing Entrez Gene

h1s

Feature-aware orthology prediction tool. Provided data package: Quest for Orthologs reference gene sets 2019.

orthofisher

orthofisher

getphylo

a python package for automated generation of phylogenetic trees from genbank files

dcc2

Dynamic core orthologs compilation tool

orthosnap

orthosnap, identify orthologous subgroups of genes in large orthologous groups of genes.

hamstr1s

Feature-aware orthology prediction tool. Provided data package: Quest for Orthologs reference gene sets 2019.

datasnakes

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

orthoevol

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵