PyRank

Orthology Python Packages

Python packages with the GitHub topic orthology. Sorted by monthly downloads, with stars and forks.
BIONF
fdog

Feature-aware Directed OrtholoG search

2K 14 4
fethalen
phylopypruner

Tree-based orthology inference with functionality for reducing contamination

1K 10 1
DessimozLab
fastoma

FastOMA is a scalable software package to infer orthology relationship.

754 102 17
datasnakes
orthoevol

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

538 28 5
cthoyt
bio2bel-entrez

A Bio2BEL package for converting Entrez and HomoloGene to BEL

455 0 0
JLSteenwyk
orthofisher

a broadly applicable tool for automated gene identification and retrieval

426 42 1
jlsteenwyk
orthosnap

a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees

356 32 1
BIONF
dcc2

Dynamic core orthologs compilation tool

320 1 0
BIONF
h1s

Feature-aware orthology prediction tool. Provided data package: Quest for Orthologs reference gene sets 2019.

265 9 2
DrBoothTJ
getphylo

a python package for automated generation of phylogenetic trees from genbank files

240 24 2
BIONF
hamstr1s

Feature-aware orthology prediction tool. Provided data package: Quest for Orthologs reference gene sets 2019.

150 9 2
datasnakes
datasnakes

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

94 28 5