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Orthology Inference Python Packages

Python packages with the GitHub topic orthology-inference. Sorted by relevance, with stars and monthly downloads.
fethalen
phylopypruner

Tree-based orthology inference with functionality for reducing contamination

3K 8 1
BIONF
fdog

Feature-aware Directed OrtholoG search tool

2K 14 4
PhyloSofS-Team
thoraxe

Disentangle homology relationships between exons.

604 12 5
univieCUBE
deepnog

Protein orthologous group assignment with deep learning

511 30 8
BIONF
h1s

Feature-aware orthology prediction tool. Provided data package: Quest for Orthologs reference gene sets 2019.

464 9 2
JLSteenwyk
orthofisher

orthofisher

408 41 1
BIONF
dcc2

Dynamic core orthologs compilation tool

375 1 0
jlsteenwyk
orthosnap

orthosnap, identify orthologous subgroups of genes in large orthologous groups of genes.

309 30 1
BIONF
hamstr1s

Feature-aware orthology prediction tool. Provided data package: Quest for Orthologs reference gene sets 2019.

209 9 2
datasnakes
datasnakes

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

202 28 5
datasnakes
orthoevol

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

189 28 5
UdeS-CoBIUS
transcriptorthology

Algorithm to infer clusters of isoorthologous transcripts using gene-level homology relationships and a Reciprocal Best Hits approach

132 1 0
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