Orthology Inference Python Packages

fdog

Feature-aware Directed OrtholoG search

phylopypruner

Tree-based orthology inference with functionality for reducing contamination

thoraxe

Use Thor's Axe to cut exons into their evolutionary building blocks :zap:

transcriptorthology

Algorithm to infer clusters of isoorthologous transcripts using gene-level homology relationships and a Reciprocal Best Hits approach

deepnog

Protein orthologous group assignment with deep learning

h1s

Feature-aware orthology prediction tool

orthofisher

a broadly applicable tool for automated gene identification and retrieval

dcc2

Dynamic core ortholog compilation tool

orthosnap

a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees

orthoevol

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

hamstr1s

Feature-aware orthology prediction tool

datasnakes

This package helps in the analysis of orthologous genes.