Orthology Inference Python Packages

phylopypruner

Tree-based orthology inference with functionality for reducing contamination

fdog

Feature-aware Directed OrtholoG search tool

thoraxe

Disentangle homology relationships between exons.

deepnog

Protein orthologous group assignment with deep learning

h1s

Feature-aware orthology prediction tool. Provided data package: Quest for Orthologs reference gene sets 2019.

orthofisher

orthofisher

dcc2

Dynamic core orthologs compilation tool

orthosnap

orthosnap, identify orthologous subgroups of genes in large orthologous groups of genes.

hamstr1s

Feature-aware orthology prediction tool. Provided data package: Quest for Orthologs reference gene sets 2019.

datasnakes

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

orthoevol

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

transcriptorthology

Algorithm to infer clusters of isoorthologous transcripts using gene-level homology relationships and a Reciprocal Best Hits approach