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Openslide Python Packages

Python packages with the GitHub topic openslide. Sorted by relevance, with stars and monthly downloads.
aignostics
aignostics

🔬 Python SDK providing access to the Aignostics Platform. Includes Aignostics Launchpad (Desktop Application), Aignostics CLI (Command-Line Interface), example notebooks, and Aignostics Client Library.

17K 14 5
arquolo
bipl

Openslide/libtiff/GDAL ndarray-like interface and lazy parallel tile-based processing

2K 3 0
haranrk
digipathai

Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay

762 75 28
jgamper
compay-syntax

:microscope: Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.

170 55 1
ysbecca
py-wsi

Python package for dealing with whole slide images (.svs) for machine learning, including intuitive, painless patch sampling using OpenSlide, automatic labeling from ImageScope XML annotation files, and functions for saving these patches and their meta data into lightning memory-mapped databases (LMDB) for quick reads.

149 166 89
andreped
vsi2tif

A package for converting images from cellSens VSI format to tiled, pyramidal TIFF

100 26 5
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