Openslide Python Packages

aignostics

🔬 Python SDK providing access to the Aignostics Platform. Includes Aignostics Launchpad (Desktop Application), Aignostics CLI (Command-Line Interface), example notebooks, and Aignostics Client Library.

bipl

Openslide/libtiff/GDAL ndarray-like interface and lazy parallel tile-based processing

digipathai

Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay

compay-syntax

:microscope: Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.

py-wsi

Python package for dealing with whole slide images (.svs) for machine learning, including intuitive, painless patch sampling using OpenSlide, automatic labeling from ImageScope XML annotation files, and functions for saving these patches and their meta data into lightning memory-mapped databases (LMDB) for quick reads.

vsi2tif

A package for converting images from cellSens VSI format to tiled, pyramidal TIFF