Ontology Python Packages

fastobo

Faultless AST for Open Biomedical Ontologies in Python.

pronto

A Python frontend to (Open Biomedical) Ontologies.

followthemoney

Data model and processing tools for investigative entity graphs. Used by OpenSanctions, OpenAleph and dozens of other fincrime tools.

obonet

OBO-formatted ontologies → networkx (Python 3)

coreason-manifest

The definitive Epistemic Plane and universal ontology of the CoReason ecosystem.

coreason-runtime

The official zero-trust, high-throughput kinetic execution engine for the coreason-manifest ontology.

wikidata

Wikidata client library for Python

trustgraph-embeddings-hf

The agent runtime platform powered by context graphs.

trustgraph-base

The agent runtime platform powered by context graphs.

trustgraph

The agent runtime platform powered by context graphs.

trustgraph-flow

The agent runtime platform powered by context graphs.

trustgraph-bedrock

The agent runtime platform powered by context graphs.

trustgraph-cli

The agent runtime platform powered by context graphs.

trustgraph-vertexai

The agent runtime platform powered by context graphs.

trustgraph-ocr

The agent runtime platform powered by context graphs.

trustgraph-mcp

The agent runtime platform powered by context graphs.

biocypher

A unifying framework for biomedical research knowledge graphs

trustgraph-unstructured

The agent runtime platform powered by context graphs.

pyhpo

A Python library to work with, analyze, filter and inspect the Human Phenotype Ontology

ontobio

python library for working with ontologies and ontology associations

aikif

Artificial Intelligence Knowledge Information Framework

vital-ai-vitalsigns

Knowledge Model Runtime, Ontology management, and interface to Graph and Vector Databases. Part of the Vital A.I. Agent Ecosystem.

ontospy

Python library and command-line interface for inspecting and visualizing RDF models aka ontologies.

biomappings

🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primary sources.