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Ontology Python Packages

Python packages with the GitHub topic ontology. Sorted by relevance, with stars and monthly downloads.
fastobo
fastobo

Faultless AST for Open Biomedical Ontologies in Python.

111K 32 4
althonos
pronto

A Python frontend to (Open Biomedical) Ontologies.

93K 262 47
opensanctions
followthemoney

Data model and processing tools for investigative entity graphs. Used by OpenSanctions, OpenAleph and dozens of other fincrime tools.

64K 65 15
dhimmel
obonet

OBO-formatted ontologies → networkx (Python 3)

50K 152 30
CoReason-AI
coreason-manifest

The definitive Epistemic Plane and universal ontology of the CoReason ecosystem.

32K 0 0
CoReason-AI
coreason-runtime

The official zero-trust, high-throughput kinetic execution engine for the coreason-manifest ontology.

29K - -
dahlia
wikidata

Wikidata client library for Python

24K 368 33
trustgraph-ai
trustgraph-embeddings-hf

The agent runtime platform powered by context graphs.

20K 2K 244
trustgraph-ai
trustgraph-base

The agent runtime platform powered by context graphs.

18K 2K 244
trustgraph-ai
trustgraph

The agent runtime platform powered by context graphs.

16K 2K 244
trustgraph-ai
trustgraph-flow

The agent runtime platform powered by context graphs.

15K 2K 244
trustgraph-ai
trustgraph-bedrock

The agent runtime platform powered by context graphs.

15K 2K 244
trustgraph-ai
trustgraph-cli

The agent runtime platform powered by context graphs.

15K 2K 244
trustgraph-ai
trustgraph-vertexai

The agent runtime platform powered by context graphs.

15K 2K 244
trustgraph-ai
trustgraph-ocr

The agent runtime platform powered by context graphs.

13K 2K 244
trustgraph-ai
trustgraph-mcp

The agent runtime platform powered by context graphs.

12K 2K 244
biocypher
biocypher

A unifying framework for biomedical research knowledge graphs

12K 304 51
trustgraph-ai
trustgraph-unstructured

The agent runtime platform powered by context graphs.

9K 2K 244
anergictcell
pyhpo

A Python library to work with, analyze, filter and inspect the Human Phenotype Ontology

8K 28 3
biolink
ontobio

python library for working with ontologies and ontology associations

7K 133 33
acutesoftware
aikif

Artificial Intelligence Knowledge Information Framework

5K 55 13
vital-ai
vital-ai-vitalsigns

Knowledge Model Runtime, Ontology management, and interface to Graph and Vector Databases. Part of the Vital A.I. Agent Ecosystem.

4K 5 0
lambdamusic
ontospy

Python library and command-line interface for inspecting and visualizing RDF models aka ontologies.

3K 247 59
biopragmatics
biomappings

🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primary sources.

3K 62 16
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