Ontologies Python Packages

lamindb

Open-source data lakehouse for biology. Context and memory for datasets and models at scale, across infrastructure. Query, trace & validate with a lineage-native lakehouse that supports bio-formats, registries & ontologies. 🍊YC S22

96K 264 25

ontoportal-client

🎡 Unified access to OntoPortal instances like BioPortal, AgroPortal, and EcoPortal

49K 6 2

ols-client

🎡 Unified access to OLS instances like from the EBI and TIB

42K 13 2

naas-abi

AI Operating System - Build your own AI using ontologies as the unifying field connecting data, models, workflows, and systems.

27K 119 37

lamindb-core

22K 264 25

linkml-owl

Extension of LinkML runtime for converting instances of LinkML classes to OWL (classes or instances)

18K 21 2

bel-resources

Utilities for BEL resource files.

14K 1 0

naas-abi-core

AI Operating System - Build your own AI using ontologies as the unifying field connecting data, models, workflows, and systems.

13K 119 37

naas-abi-marketplace

AI Operating System - Build your own AI using ontologies as the unifying field connecting data, models, workflows, and systems.

12K 119 37

naas-abi-cli

AI Operating System - Build your own AI using ontologies as the unifying field connecting data, models, workflows, and systems.

10K 119 37

pyobo

📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures

10K 76 18

emmontopy

Library for representing and working with ontologies in Python

7K 68 14

ssslm

A simple standard for sharing literal mappings (SSSLM)

7K 1 0

nxontology

NetworkX-based Python library for representing ontologies

7K 95 7

bio2bel

A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)

3K 21 5

ontolearner

OntoLearner: A Modular Python Library for Ontology Learning with LLMs.

3K 39 5

emmo

Library for representing and working with ontologies in Python

2K 68 14

omnipy

Omnipy is a high level Python library for type-driven data wrangling and scalable workflow orchestration (under development)

2K 26 1

mowl-borg

mOWL: Machine Learning library with Ontologies

1K 91 4

deeponto

A package for ontology engineering with deep learning and language models.

1K 293 25

interpretme

An interpretable machine learning pipeline over knowledge graphs

777 27 2

cello-classify

CellO

759 68 14

sboannotator

SBOannotator: A Python tool for the automated assignment of Systems Biology Onotology terms

567 8 5

pyfactxx

Python bindings for upgraded FaCT++ description logic reasoner

454 31 4