Ont Python Packages

pie-phasing-eval

Phasing all-In-one Evaluator

dynamont

Dynamont is a bioinformatics tool for segmenting/resquiggling Oxford Nanopore Technologies (ONT) sequencing signals using dynamic programming and HMM-based approaches. It is designed to align raw nanopore signals to nucleotide sequences and supports DNA and RNA datasets.

readfish

CLI tool for flexible and fast adaptive sampling on ONT sequencers

read5

Wrapper to read fast5, slow5, blow5 and pod5 files.

nanofetch

Extracts gene-centered BAMs in seconds by gene name, panel, or genome build, from GRCh37 to T2T.

read5-ont

Wrapper to read fast5 and pod5 files.

jmq-olt-zyxel

Paquete en Python que proporciona una interfaz basada en clases para conectar vía Telnet a un OLT Zyxel (modelo OLT1408A) y extraer información de las ONT (Optical Network Terminations) en estructuras de datos listas para serializar a JSON. Todo se realiza sin SNMP, únicamente mediante comandos Telnet y parseo de las salidas ASC

pod5viewer

GUI for inspecting POD5 files

epg-longbow

Basecalling configuration prediction from FASTQ files

ont-end-reason

Oxford Nanopore end_reason analysis CLI — discover, tag, filter, analyse, visualise. Companion to the end-reason paper. Live dashboard at homepage URL ↗

fast5seek

Subset of fast5 files contained in a fastq, BAM, or SAM file.

tmerge

Build highly accurate transcripts from long-read RNA data