PyRank

Omop Python Packages

Python packages with the GitHub topic omop. Sorted by monthly downloads, with stars and forks.
vitaldb
duckcdm

DuckCDM — DuckDB-powered OMOP CDM engine: OHDSI SqlRender, Circe, Achilles and an ATLAS 3.0-compatible WebAPI in pure Python

4K 0 0
RADar-AZDelta
rabbit-in-a-blender

An ETL pipeline to transform your EMP data to OMOP.

2K 18 6
vitaldb
cdmduck

DuckCDM — DuckDB-powered OMOP CDM engine: OHDSI SqlRender, Circe, Achilles and an ATLAS 3.0-compatible WebAPI in pure Python

2K 0 0
theislab
ehrapy

Electronic Health Record Analysis with Python.

1K 367 53
vitaldb
cdmd

DuckCDM — DuckDB-powered OMOP CDM engine: OHDSI SqlRender, Circe, Achilles and an ATLAS 3.0-compatible WebAPI in pure Python

1K 0 0
thehyve
kotobuki

Update Usagi mappings with kotobuki

701 3 0
DZD-eV-Diabetes-Research
dzdomop

A Python data class representation of the Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM)

255 3 1
Chesterguan
psdl-lang

PSDL — Patient Scenario Definition Language: portable, reproducible clinical scenario and cohort definitions over OMOP CDM. Part of the Prometheno open-protocol stack (HAVEN · PSDL · VERITAS).

247 9 0
aphp
eds-scikit

eds-scikit is a Python library providing tools to process and analyse OMOP data

234 45 6
edencehealth
sqlalchemy-omopcdm

SQLAlchemy Declarative Mapping Models for OHDSI OMOP CDM

99 1 0
callahantiff
omop2obo

OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies

56 100 12