Omop Cdm Python Packages

rabbit-in-a-blender

An ETL pipeline to transform your EMP data to OMOP.

pycyclops

A toolkit for evaluating and monitoring AI models in clinical settings

omophub

Python SDK for OMOP/OHDSI vocabularies - query 11M+ medical concepts across SNOMED, ICD-10, RxNorm, LOINC & 120+ terminologies via simple API

kotobuki

Update Usagi mappings with kotobuki

dzdomop

A Python data class representation of the Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM)

omop

OMOP Common Data Model.

omop2survey

The omop2survey Python package transforms standardized response codes from the OMOP CDM survey variables into numeric values and simplifies data preparation by providing functionalities for mapping and converting response codes, as well as handling missing data, facilitating easier and more reliable data analysis

fastssv

Fast Semantic Static Validator

sqlalchemy-omopcdm

SQLAlchemy Declarative Mapping Models for OHDSI OMOP CDM

omopsurvey

The omop2survey Python package transforms standardized response codes from the OMOP CDM survey variables into numeric values and simplifies data preparation by providing functionalities for mapping and converting response codes, as well as handling missing data, facilitating easier and more reliable data analysis

omop2obo

OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies