Omop Cdm Python Packages

omophub

Python SDK for OMOP/OHDSI vocabularies - query 10M+ medical concepts across SNOMED, ICD-10, RxNorm, LOINC & 90+ terminologies via simple API

rabbit-in-a-blender

An ETL pipeline to transform your EMP data to OMOP.

pycyclops

Framework for healthcare ML implementation

dzdomop

A Python ORM/data classes representation of the OMOP Common Data Model in different flavors powered by sqlacodegen

kotobuki

Update Usagi mappings with kotobuki

omop2survey

The omop2survey Python package transforms standardized response codes from the OMOP CDM survey variables into numeric values and simplifies data preparation by providing functionalities for mapping and converting response codes, as well as handling missing data, facilitating easier and more reliable data analysis

fastssv

Fast Semantic Static Validator - A semantic validation framework for OMOP CDM SQL queries

omop

OMOP Common Data Model [`source <https://github.com/laminlabs/omop/blob/main/omop/models.py>`__].

sqlalchemy-omopcdm

OMOP CDM v5.4 SQLAlchemy Declarative Mapping Models

omopsurvey

The 'omopsurvey' Python package transforms standardized response codes from the OMOP CDM survey variables into numeric values and simplifies data preparation by providing functionalities for mapping and converting response codes, as well as handling missing data, facilitating easier and more reliable data analysis.

omop2obo

OMOP2OBO is the first health system-wide, disease-agnostic mappings between standardized clinical terminologies in the Observational Medical Outcomes Partnership (OMOP) common data model and several Open Biomedical Ontologies (OBO).