PyRank

Omop Cdm Python Packages

Python packages with the GitHub topic omop-cdm. Sorted by relevance, with stars and monthly downloads.
RADar-AZDelta
rabbit-in-a-blender

An ETL pipeline to transform your EMP data to OMOP.

4K 16 6
VectorInstitute
pycyclops

A toolkit for evaluating and monitoring AI models in clinical settings

2K 91 16
fastomop
fastssv

Fast Semantic Static Validator

812 4 1
DZD-eV-Diabetes-Research
dzdomop

A Python data class representation of the Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM)

314 3 1
thehyve
kotobuki

Update Usagi mappings with kotobuki

219 3 0
laminlabs
omop

OMOP Common Data Model.

205 2 0
elifdy
omop2survey

The omop2survey Python package transforms standardized response codes from the OMOP CDM survey variables into numeric values and simplifies data preparation by providing functionalities for mapping and converting response codes, as well as handling missing data, facilitating easier and more reliable data analysis

167 6 0
edencehealth
sqlalchemy-omopcdm

OMOP CDM v5.4 SQLAlchemy Declarative Mapping Models

153 1 0
elifdy
omopsurvey

The 'omopsurvey' Python package transforms standardized response codes from the OMOP CDM survey variables into numeric values and simplifies data preparation by providing functionalities for mapping and converting response codes, as well as handling missing data, facilitating easier and more reliable data analysis.

98 6 0
callahantiff
omop2obo

OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies

65 96 12