PyRank

Omics Python Packages

Python packages with the GitHub topic omics. Sorted by monthly downloads, with stars and forks.
scikit-bio
scikit-bio

scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.

93K 1K 357
scDataset
scdataset

scDataset: Scalable Data Loading for Deep Learning on Large-Scale Single-Cell Omics

6K 52 2
DNAstack
dnastack-client-library

The command line interface and client library for DNAstack services and GA4GH-compatible service, implemented in Python

6K 0 0
Starlitnightly
omicverse

A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

4K 1K 148
tacular-omics
paftacular

Parse and serialize HUPO-PSI mzPAF fragment-ion annotations for mass-spectrometry proteomics in Python.

3K 1 0
tacular-omics
pefftacular

Python library for reading and writing PEFF (PSI Extended FASTA Format) files. PEFF is a superset of FASTA used in proteomics that carries rich per-entry annotations.

3K 1 0
saezlab
corneto

Unified knowledge-driven network inference from omics data

3K 106 10
the-omics-os
lobster-ai

The self-evolving agentic framework for bioinformatics

3K 46 13
the-omics-os
lobster-ai-tui

The self-evolving agentic framework for bioinformatics

2K 46 13
tacular-omics
spxtacular

Chainable Spectrum API for MS processing: denoising, isotope deconvolution, matching, scoring, plotting

2K 4 1
bnediction
bonesistools

Python toolkit from omics data to executable models

2K 3 1
lucas-diedrich
bpca

Bayesian Principal Component Analysis in Python

1K 1 1
Multiomics-Analytics-Group
acore

Python package to preprocess and analyse multi-omics data

1K 4 1
the-omics-os
lobster-transcriptomics

The self-evolving agentic framework for bioinformatics

1K 46 13
the-omics-os
lobster-genomics

The self-evolving agentic framework for bioinformatics

1K 46 13
the-omics-os
lobster-proteomics

The self-evolving agentic framework for bioinformatics

1K 46 13
the-omics-os
lobster-visualization

The self-evolving agentic framework for bioinformatics

1K 46 13
the-omics-os
lobster-research

The self-evolving agentic framework for bioinformatics

1K 46 13
Starlitnightly
pyomic

A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

1K 1K 148
the-omics-os
lobster-ml

The self-evolving agentic framework for bioinformatics

961 46 13
the-omics-os
lobster-structural-viz

The self-evolving agentic framework for bioinformatics

953 46 13
the-omics-os
lobster-drug-discovery

The self-evolving agentic framework for bioinformatics

950 46 13
the-omics-os
lobster-metabolomics

The self-evolving agentic framework for bioinformatics

943 46 13
the-omics-os
lobster-vector

The self-evolving agentic framework for bioinformatics

924 46 13