PyRank

Omics Python Packages

Python packages with the GitHub topic omics. Sorted by relevance, with stars and monthly downloads.
Starlitnightly
omicverse

A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

11K 989 126
DNAstack
dnastack-client-library

The command line interface and client library for DNAstack services and GA4GH-compatible service, implemented in Python

5K 0 0
the-omics-os
lobster-ai

The self-evolving agentic framework for bioinformatics

4K 31 6
the-omics-os
lobster-ai-tui

The self-evolving agentic framework for bioinformatics

4K 31 6
scDataset
scdataset

scDataset: Scalable Data Loading for Deep Learning on Large-Scale Single-Cell Omics

2K 45 2
saezlab
corneto

Unified knowledge-driven network inference from omics data

2K 101 9
Starlitnightly
pyomic

A python framework library for omics analysis

2K 972 126
lucas-diedrich
bpca

Bayesian Principal Component Analysis in Python

2K 1 0
the-omics-os
lobster-visualization

The self-evolving agentic framework for bioinformatics

1K 31 6
the-omics-os
lobster-research

The self-evolving agentic framework for bioinformatics

1K 31 6
the-omics-os
lobster-proteomics

The self-evolving agentic framework for bioinformatics

1K 31 6
the-omics-os
lobster-transcriptomics

The self-evolving agentic framework for bioinformatics

1K 31 6
Multiomics-Analytics-Group
vuecore

A Python package for creating interactive and static visualizations of multi-omics data

1K 4 0
the-omics-os
lobster-genomics

The self-evolving agentic framework for bioinformatics

1K 31 6
Multiomics-Analytics-Group
acore

Python package to preprocess and analyse multi-omics data

914 3 1
the-omics-os
lobster-metadata

The self-evolving agentic framework for bioinformatics

841 31 6
fraenkel-lab
garnet

No description available

841 4 2
shenwanxiang
aggmap

Jigsaw-like AggMap: A Robust and Explainable Omics Deep Learning Tool

825 39 7
the-omics-os
lobster-ml

The self-evolving agentic framework for bioinformatics

811 31 6
jan-forest
autoencodix

Python library for multi-omics data integration by autoencoders

780 8 2
the-omics-os
lobster-metabolomics

The self-evolving agentic framework for bioinformatics

749 31 6
the-omics-os
lobster-structural-viz

The self-evolving agentic framework for bioinformatics

702 31 6
the-omics-os
lobster-drug-discovery

Drug discovery agent for Lobster AI — target identification, compound profiling, clinical translation, pharmacogenomics

697 31 6
cantinilab
recon

Exploring multicellular coordination from single-cell gene expression / multi-omics using mutlilayer network representations

600 8 0