PyRank

Omics Python Packages

Python packages with the GitHub topic omics. Sorted by relevance, with stars and monthly downloads.
Starlitnightly
omicverse

A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

8K 1K 140
DNAstack
dnastack-client-library

The command line interface and client library for DNAstack services and GA4GH-compatible service, implemented in Python

4K 0 0
the-omics-os
lobster-ai

The self-evolving agentic framework for bioinformatics

4K 38 6
bnediction
bonesistools

Python-implemented toolkits for upstream and downstream analyses around the BoNesis ecosystem.

3K 3 1
saezlab
corneto

Unified knowledge-driven network inference from omics data

2K 104 9
scDataset
scdataset

scDataset: Scalable Data Loading for Deep Learning on Large-Scale Single-Cell Omics

2K 50 2
the-omics-os
lobster-ai-tui

The self-evolving agentic framework for bioinformatics

2K 38 6
the-omics-os
lobster-transcriptomics

The self-evolving agentic framework for bioinformatics

1K 38 6
the-omics-os
lobster-visualization

The self-evolving agentic framework for bioinformatics

1K 38 6
the-omics-os
lobster-research

The self-evolving agentic framework for bioinformatics

1K 38 6
the-omics-os
lobster-genomics

The self-evolving agentic framework for bioinformatics

1K 38 6
the-omics-os
lobster-proteomics

The self-evolving agentic framework for bioinformatics

1K 38 6
Multiomics-Analytics-Group
vuecore

A Python package for creating interactive and static visualizations of multi-omics data

1K 4 0
Multiomics-Analytics-Group
acore

Python package to preprocess and analyse multi-omics data

1K 4 1
Starlitnightly
pyomic

A python framework library for omics analysis

972 1K 140
qchiujunhao
omicsmeta

Automated harmonization of public omics metadata from GEO, SRA, BioSample, and tabular exports.

846 0 0
the-omics-os
lobster-metadata

The self-evolving agentic framework for bioinformatics

833 38 6
lucas-diedrich
bpca

Bayesian Principal Component Analysis in Python

819 1 0
the-omics-os
lobster-ml

The self-evolving agentic framework for bioinformatics

778 38 6
the-omics-os
lobster-metabolomics

The self-evolving agentic framework for bioinformatics

764 38 6
the-omics-os
lobster-structural-viz

The self-evolving agentic framework for bioinformatics

754 38 6
the-omics-os
lobster-drug-discovery

The self-evolving agentic framework for bioinformatics

753 38 6
fraenkel-lab
garnet

No description available

723 4 2
shenwanxiang
aggmap

Jigsaw-like AggMap: A Robust and Explainable Multi-Channel Omics Deep Learning Tool

654 39 7