PyRank

Omics Data Integration Python Packages

Python packages with the GitHub topic omics-data-integration. Sorted by relevance, with stars and monthly downloads.
laminlabs
lamindb

Open-source data lakehouse for biology. Context and memory for datasets and models at scale, across infrastructure. Query, trace & validate with a lineage-native lakehouse that supports bio-formats, registries & ontologies. 🍊YC S22

96K 264 25
laminlabs
lamindb-core

Open-source data lakehouse for biology. Context and memory for datasets and models at scale, across infrastructure. Query, trace & validate with a lineage-native lakehouse that supports bio-formats, registries & ontologies. 🍊YC S22

22K 264 25
saezlab
corneto

Unified knowledge-driven network inference from omics data

2K 101 9
M4i-Imaging-Mass-Spectrometry
thyra

A modern Python library for converting Mass Spectrometry Imaging (MSI) data into SpatialData/Zarr format - your portal to spatial omics

2K 20 1
vmspereira
mewpy

MEWpy - Metabolic Engineering in Python

973 0 0
Multiomics-Analytics-Group
acore

Python package to preprocess and analyse multi-omics data

909 3 1
lozuponelab
amon-bio

Annotation of Metabolite Origin via Networks: A tool for predicting putative

751 26 11
qwerty239qwe
pipegem

Processing and integrating data with genome-scale metabolic models (GEM)

482 0 2
sbl-sdsc
mcp-genelab

MCP server for querying Neo4j Knowledge Graphs with custom tools for quering GeneLab

226 2 1