PyRank

Omics Data Integration Python Packages

Python packages with the GitHub topic omics-data-integration. Sorted by relevance, with stars and monthly downloads.
laminlabs
lamindb

Open-source data framework for biology. Query, trace & validate with a lineage-native lakehouse that supports bio-formats, registries & ontologies. 🍊YC S22

126K 272 28
laminlabs
lamindb-core

Open-source data framework for biology. Query, trace & validate with a lineage-native lakehouse that supports bio-formats, registries & ontologies. 🍊YC S22

37K 272 28
M4i-Imaging-Mass-Spectrometry
thyra

A modern Python library for converting Mass Spectrometry Imaging (MSI) data into standardized SpatialData/Zarr format, enabling seamless integration with spatial omics analysis workflows.

3K 20 1
saezlab
corneto

Unified knowledge-driven network inference from omics data

2K 104 9
vmspereira
mewpy

Metabolic Engineering Workbench

1K 0 0
Multiomics-Analytics-Group
acore

Python package to preprocess and analyse multi-omics data

1K 4 1
lozuponelab
amon-bio

Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host with or without metabolomics data

694 26 11
sbl-sdsc
mcp-genelab

A Model Context Protocol (MCP) server for querying Neo4j Graph Databases with customized tools to query the NASA GeneLab Knowledge Graph

306 3 1