PyRank

Omics Data Integration Python Packages

Python packages with the GitHub topic omics-data-integration. Sorted by monthly downloads, with stars and forks.
laminlabs
lamindb

Open-source data management for multimodal AI. Query, trace, and govern with a lineage-native, format-agnostic lakehouse for agents and teams. Supports biological formats and registries - by the creators of Scanpy. 🍊YC S22

46K 418 143
laminlabs
lamindb-core

Open-source data management for multimodal AI. Query, trace, and govern with a lineage-native, format-agnostic lakehouse for agents and teams. Supports biological formats and registries - by the creators of Scanpy. 🍊YC S22

36K 418 143
M4i-Imaging-Mass-Spectrometry
thyra

A modern Python library for converting Mass Spectrometry Imaging (MSI) data into standardized SpatialData/Zarr format, enabling seamless integration with spatial omics analysis workflows.

8K 25 1
saezlab
corneto

Unified knowledge-driven network inference from omics data

3K 108 10
Multiomics-Analytics-Group
acore

Python package to preprocess and analyse multi-omics data

1K 4 1
lozuponelab
amon-bio

Annotation of Metabolite Origin via Networks: A tool for predicting putative

745 26 11
sbl-sdsc
mcp-genelab

MCP server for querying the NASA GeneLab Knowledge Graph with specialist tools for differential gene expression, DNA methylation, and organism abundance analyses (per-assay and cross-assay), plus DE/DM overlap detection, volcano and Venn plotting, session-scoped resource-based plot delivery, and ALB health/usage-metrics endpoints for shared-process (ECS Fargate) deployment.

637 4 1