Omero Python Packages

napari-omero

Browse your OMERO database from within napari.

biomero

BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster

omero-py

Python project containing Ice remoting code for OMERO

omero-web

Django-based OMERO.web client

biomero-importer

System that allows automatic importing of datasets via local network

omero-biomero

Plugin adding monitored, in-place uploads and workflows to OMERO Webclient

biomero-shallower

Python library and CPU-only container for shallow OME-Zarr normalization in BIOMERO. Reuses verified canonical pixels while retaining new and changed image and label data, reducing storage and result transfers. Shared by BIOMERO.importer and remote Slurm workflows; no OMERO connection or credentials required.

omero-marshal

OMERO marshalling infrastructure

omero-iviewer

An OMERO.web app allowing to view images

omero-figure

An OMERO.web app for creating Figures from images in OMERO

omero-cli-transfer

An OMERO CLI plugin for creating transfer packets between OMERO servers.

omero-cli-zarr

Plugin for exporting images in zarr format.

omero-metadata

OMERO plugin for metadata manipulation https://www.openmicroscopy.org/omero/

omero-vitessce

OMERO.web plugin for the Vitessce multimodal data viewer.

omero-mapr

An OMERO.web app allowing to browse the data through attributes linked to the image

omero-gallery

A Python plugin for OMERO.web

omero-3dscript

OMERO.web app to animate multi-dimensional microscopy using 3Dscript, directly from within the OMERO environment.

omero-certificates

OMERO server certificate management plugin

omero-cli-render

OMERO command-line tool for rendering

omero-forms

Extension to OMERO.web to enhance metadata input and provide provenance

omero-scripts

Core OMERO Scripts

omero-rois

OMERO python ROI utils

omero2pandas

Exchange data between OMERO.tables and pandas DataFrames.

omero-parade

OMERO.web plugin for displaying Dataset thumbnails or Plates in webclient center panel