Ome Python Packages

ome-zarr

Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

ome-zarr-models

A minimal Python package for reading, writing and validating OME-Zarr (meta)data

bffile

Modern Bio-Formats wrapper with clean lazy Python API

bioformats-jar

(deprecated) meta-package to import bioformats_jar from scyjava

eubi-bridge

A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processing and multi-dimensional concatenation.

omego

OME, Go! Installation and administration tool for OME applications.

nis2pyr

Python utility and library for converting Nikon .nd2 files to pyramidal OME TIFF.

jupyter-omero-authenticator

Use OMERO to authenticate with JupyterHub