Oligonucleotide Python Packages

ifpd

An iFISH probe design pipeline, with web interface included.

oligo-melting

Software to estimate oligonucleotide duplexes melting temperature. Includes state-of-the-art monovalent (e.g., Na+) and bivalent (Mg2+) ion correction, formamide (or general denaturant) correction, and melting curve estimation.

fish-prode

iFISH Probe Design: a Python3 package to build iFISH probes.

annokit

annotation toolkit.

ogilo-array

Automated construction of oligo library sequences for oligo array synthesis.

fealden

Tool for generating optimized nucleic acid biosensor sequences.

ifpd2

An iFISH probe design pipeline (II)

seqbox

seq process tools box

kman

K-Mer management tools