PyRank

Oligonucleotide Python Packages

Python packages with the GitHub topic oligonucleotide. Sorted by monthly downloads, with stars and forks.
ggirelli
ifpd

iFISH Probe Design: a Python3 package to build iFISH probes.

326 12 6
ggirelli
oligo-melting

Software to estimate oligonucleotide duplexes melting temperature. Includes state-of-the-art monovalent (e.g., Na+) and bivalent (Mg2+) ion correction, formamide (or general denaturant) correction, and melting curve estimation.

194 12 4
iOLIGO
annokit

Reference genome annotation file processing toolset

126 0 0
ggirelli
fish-prode

iFISH Probe Design: a Python3 package to build iFISH probes.

105 12 6
scbirlab
ogilo-array

⛓️ Automating construction of oligo library sequences for oligo array synthesis.

101 0 0
iOLIGO
seqbox

seq process tools box

78 0 0
ggirelli
ifpd2

ifpd2: a Python3.7+ package to build iFISH probes

71 3 1
ggirelli
kman

K-Mer management tools

64 0 0
Paradoxdruid
fealden

Tool for generating optimized nucleic acid biosensor sequences

57 2 0