Ohdsi Python Packages

pyomop

Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries, MCP server and FHIR import.

rabbit-in-a-blender

An ETL pipeline to transform your EMP data to OMOP.

omophub

Python SDK for OMOP/OHDSI vocabularies - query 10M+ medical concepts across SNOMED, ICD-10, RxNorm, LOINC & 90+ terminologies via simple API

dzdomop

A Python data class representation of the Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM)

kotobuki

Update Usagi mappings with kotobuki

sqlalchemy-omopcdm

OMOP CDM v5.4 SQLAlchemy Declarative Mapping Models

iflow-mcp-dermatologist-pyomop

OMOP CDM utils in Python