PyRank

Ohdsi Python Packages

Python packages with the GitHub topic ohdsi. Sorted by monthly downloads, with stars and forks.
dermatologist
pyomop

Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries, MCP server and FHIR import.

7K 67 11
vitaldb
duckcdm

DuckCDM — DuckDB-powered OMOP CDM engine: OHDSI SqlRender, Circe, Achilles and an ATLAS 3.0-compatible WebAPI in pure Python

4K 0 0
RADar-AZDelta
rabbit-in-a-blender

An ETL pipeline to transform your EMP data to OMOP.

2K 18 6
omopHub
omophub

Python SDK for OMOP/OHDSI vocabularies - query 11M+ medical concepts across SNOMED, ICD-10, RxNorm, LOINC & 120+ terminologies via simple API

2K 7 3
vitaldb
cdmduck

DuckCDM — DuckDB-powered OMOP CDM engine: OHDSI SqlRender, Circe, Achilles and an ATLAS 3.0-compatible WebAPI in pure Python

2K 0 0
vitaldb
cdmd

DuckCDM — DuckDB-powered OMOP CDM engine: OHDSI SqlRender, Circe, Achilles and an ATLAS 3.0-compatible WebAPI in pure Python

1K 0 0
thehyve
kotobuki

Update Usagi mappings with kotobuki

701 3 0
DZD-eV-Diabetes-Research
dzdomop

A Python data class representation of the Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM)

255 3 1
Chesterguan
psdl-lang

PSDL — Patient Scenario Definition Language: portable, reproducible clinical scenario and cohort definitions over OMOP CDM. Part of the Prometheno open-protocol stack (HAVEN · PSDL · VERITAS).

247 9 0
dermatologist
iflow-mcp-dermatologist-pyomop

Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries, MCP server and FHIR import.

246 67 11
edencehealth
sqlalchemy-omopcdm

SQLAlchemy Declarative Mapping Models for OHDSI OMOP CDM

99 1 0