Ode Model Python Packages

layercake-model

LayerCake is a framework to design systems of partial differential equations (PDEs), and convert them to ordinary differential equations (ODEs) via Galerkin-type expansions.

yaml2sbml

Tool to convert an ODE model specified in the YAML format to SBML.

phoskintime

A Network Dynamics Toolkit for Phosphorylation Cascades

pyodys

This repository contains a robust and flexible Python package for solving ordinary differential equations (ODEs). It supports both Runge–Kutta schemes (explicit, DIRK) and BDF multistep methods, with adaptive time-stepping and strong support for sparse Jacobians--making it well-suited for large-scale and stiff problems.

hboms

Python package for automatically generating Stan source code for hierarchical Bayesian ordinary differential equation models.