LayerCake is a framework to design systems of partial differential equations (PDEs), and convert them to ordinary differential equations (ODEs) via Galerkin-type expansions.
PhosKinTime is a Python toolkit for ODE‑based modeling of phosphorylation kinetics and transcriptional time‑series, featuring parameter estimation, sensitivity analysis, steady‑state computation, and interactive visualization.
This is a robust and flexible Python package for solving ordinary differential equations (ODEs). The solver is built to handle both explicit and implicit Runge–Kutta methods using a powerful Butcher tableau approach, and it includes a numerical Jacobian for convenience.
