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Obofoundry Python Packages

Python packages with the GitHub topic obofoundry. Sorted by relevance, with stars and monthly downloads.
biopragmatics
curies

🐸 Idiomatic conversion between URIs and compact URIs (CURIEs) in Python

374K 27 7
linkml
prefixmaps

Semantic prefix map registry

217K 14 5
fastobo
fastobo

Faultless AST for Open Biomedical Ontologies in Python.

111K 32 4
althonos
pronto

A Python frontend to (Open Biomedical) Ontologies.

93K 262 47
cthoyt
ontoportal-client

🎡 Unified access to OntoPortal instances like BioPortal, AgroPortal, and EcoPortal

49K 6 2
biopragmatics
pyobo

📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures

10K 76 18
biolink
ontobio

python library for working with ontologies and ontology associations

7K 133 33
cthoyt
obographs

A Pydantic model for OBO Graph JSON

3K 1 0
INCATools
dosdp

A simple system for specifying OWL class design patterns for OBO-ish ontologies.

438 48 5
biolink
biolinkmg

Schema and generated objects for biolink data model and upper ontology

411 240 85
biopragmatics
biolookup

🔍 The Biolookup Service retrieves metadata and ontological information about biomedical entities.

396 5 0
cmungall
kgcl

Tools for working with KGCL

354 20 9
callahantiff
pkt-kg

A Python library for scalable knowledge semantic graph construction

322 201 35
biopragmatics
debio

A community-curated, decentralized biomedical ontology.

244 1 1
INCATools
odk-core

Docker-less, core package for the Ontology Development Kit

177 1 2
linkml
sparqlfun

sparql templates for linkml (alpha)

166 13 0
biopragmatics
oquat

🎬 Ontology Quality Assesment Toolkit

97 5 1
callahantiff
omop2obo

OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies

65 96 12
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