Nwb Python Packages

pynwb

A Python API for working with Neurodata stored in the NWB Format

nwbinspector

Tool to help inspect NWB files for compliance with NWB Best Practices

remfile

File-like object from url of remote file, optimized for use with h5py.

hdmf-docutils

Collection of CLIs, scripts and modules useful to generate HDMF/NWB schema documentation

jnwb

Python library for NWB (Neurodata Without Borders) electrophysiology analysis

ephys-mcp

MCP server for read-only analysis of intracortical (spike-level) brain-computer-interface recordings

scitex-dataset

Multi-domain scientific dataset fetcher (neuroscience, biology, medical)

nwbwidgets

Explore the hierarchical structure of NWB 2.0 files and visualize data with Jupyter widgets.

spyglass-neuro

Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF

jdb-to-nwb

Converts electrophysiology, photometry, and behavioral data for the hex maze task used by the Berke Lab at UCSF to NWB format.

ndos

Recover, describe and query animal neuroscience data you did not organise yourself

neurosift

Browser-based NWB visualization and DANDI exploration

dlc2nwb

Utilities to convert DeepLabCut (DLC), output to/from Neurodata Without Borders (NWB) format.

segovia

A fast, memory-bounded Rust engine for electrophysiology signal processing — Neuropixels-scale, callable from Python.

nwb-conversion-tools

Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.

rutishauserlabtonwb

A NWB-based Dataset and Processing Pipeline of Human Single-Neuron Activity During a Declarative Memory Task

nwb-docutils

Collection of CLIs, scripts and modules useful to generate HDMF/NWB schema documentation

ecogvis

Time series visualizer and data processing tools for Electrocorticography (ECoG) signals stored in NWB files, for Python.

ndx-hed

HED extensions for Neurodata Without Borders (nwb)

nwb-datajoint

Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF

hsntools

Code for working with human single-neurons (HSN): a module as part of the HSNPipeline.

buffalo-lab-data-to-nwb

Scripts to convert Buffalo Lab data to the NWB standard

neuroglia

a Python machine learning library for neurophysiology data