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Nwb Python Packages

Python packages with the GitHub topic nwb. Sorted by relevance, with stars and monthly downloads.
NeurodataWithoutBorders
pynwb

A Python API for working with Neurodata stored in the NWB Format

249K 215 94
NeurodataWithoutBorders
nwbinspector

Tool to help inspect NWB files for compliance with NWB Best Practices

50K 22 11
magland
remfile

File-like object from url of remote file, optimized for use with h5py.

16K 8 2
hdmf-dev
hdmf-docutils

Collection of CLIs, scripts and modules useful to generate HDMF/NWB schema documentation

8K 0 3
ywatanabe1989
scitex-dataset

Multi-domain scientific dataset fetcher — neuroscience, biology, pharmacology, medical. Part of SciTeX.

6K 0 0
NeurodataWithoutBorders
nwbwidgets

Explore the hierarchical structure of NWB 2.0 files and visualize data with Jupyter widgets.

2K 52 27
calderast
jdb-to-nwb

Converts electrophysiology, photometry, and behavioral data for the hex maze task used by the Berke Lab at UCSF to NWB format.

1K 6 2
LorenFrankLab
spyglass-neuro

Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF

1K 116 55
DeepLabCut
dlc2nwb

Utilities to convert DeepLabCut (DLC), output to/from Neurodata Without Borders (NWB) format.

844 14 7
rutishauserlab
rutishauserlabtonwb

A NWB-based Dataset and Processing Pipeline of Human Single-Neuron Activity During a Declarative Memory Task

372 21 14
NeurodataWithoutBorders
nwb-docutils

Collection of CLIs, scripts and modules useful to generate HDMF/NWB schema documentation

369 0 3
catalystneuro
nwb-conversion-tools

Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.

352 25 12
flatironinstitute
neurosift

Simple utility to view local NWB files using Neurosift

288 64 15
catalystneuro
ecogvis

Time series visualizer and data processing tools for Electrocorticography (ECoG) signals stored in NWB files, for Python.

252 30 18
LorenFrankLab
nwb-datajoint

Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF

208 116 55
ben-dichter-consulting
buffalo-lab-data-to-nwb

Scripts to convert Buffalo Lab data to the NWB standard

173 2 0
HSNPipeline
hsntools

A module of code for working with HSN as part of the HSNPipeline.

148 0 1
hed-standard
ndx-hed

HED extensions for Neurodata Without Borders (nwb)

139 0 3
AllenInstitute
neuroglia

scikit-learn compatible transformers for neural data science

72 36 7
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