Nwb Python Packages

pynwb

A Python API for working with Neurodata stored in the NWB Format

nwbinspector

Tool to help inspect NWB files for compliance with NWB Best Practices

remfile

File-like object from url of remote file, optimized for use with h5py.

hdmf-docutils

Collection of CLIs, scripts and modules useful to generate HDMF/NWB schema documentation

scitex-dataset

Multi-domain scientific dataset fetcher (neuroscience, biology, medical)

segovia

A fast, memory-bounded Rust engine for electrophysiology signal processing — Neuropixels-scale, callable from Python.

nwbwidgets

Explore the hierarchical structure of NWB 2.0 files and visualize data with Jupyter widgets.

dlc2nwb

Utilities to convert DeepLabCut (DLC), output to/from Neurodata Without Borders (NWB) format.

spyglass-neuro

Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF

jdb-to-nwb

Converts electrophysiology, photometry, and behavioral data for the hex maze task used by the Berke Lab at UCSF to NWB format.

nwb-conversion-tools

Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.

nwb-docutils

Collection of CLIs, scripts and modules useful to generate HDMF/NWB schema documentation

ecogvis

Timeseries visualizer for Electrocorticography (ECoG) signals stored in NWB files.

neurosift

Browser-based NWB visualization and DANDI exploration

rutishauserlabtonwb

A NWB-based Dataset and Processing Pipeline of Human Single-Neuron Activity During a Declarative Memory Task

nwb-datajoint

Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF

hsntools

Code for working with the Human Single-Neuron Pipeline.

buffalo-lab-data-to-nwb

Scripts to convert Buffalo Lab data to the NWB standard

ndx-hed

NWB extension for HED data

neuroglia

a Python machine learning library for neurophysiology data