Nwb Python Packages

pynwb

A Python API for working with Neurodata stored in the NWB Format

nwbinspector

Tool to help inspect NWB files for compliance with NWB Best Practices

remfile

File-like object from url of remote file, optimized for use with h5py.

hdmf-docutils

Collection of CLIs, scripts and modules useful to generate HDMF/NWB schema documentation

scitex-dataset

Multi-domain scientific dataset fetcher — neuroscience, biology, pharmacology, medical. Part of SciTeX.

nwbwidgets

Explore the hierarchical structure of NWB 2.0 files and visualize data with Jupyter widgets.

jdb-to-nwb

Converts electrophysiology, photometry, and behavioral data for the hex maze task used by the Berke Lab at UCSF to NWB format.

spyglass-neuro

Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF

dlc2nwb

Utilities to convert DeepLabCut (DLC), output to/from Neurodata Without Borders (NWB) format.

rutishauserlabtonwb

A NWB-based Dataset and Processing Pipeline of Human Single-Neuron Activity During a Declarative Memory Task

nwb-docutils

Collection of CLIs, scripts and modules useful to generate HDMF/NWB schema documentation

nwb-conversion-tools

Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.

neurosift

Simple utility to view local NWB files using Neurosift

ecogvis

Time series visualizer and data processing tools for Electrocorticography (ECoG) signals stored in NWB files, for Python.

nwb-datajoint

Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF

buffalo-lab-data-to-nwb

Scripts to convert Buffalo Lab data to the NWB standard

hsntools

A module of code for working with HSN as part of the HSNPipeline.

ndx-hed

HED extensions for Neurodata Without Borders (nwb)

neuroglia

scikit-learn compatible transformers for neural data science