Nuclei Segmentation Python Packages

stardist

StarDist - Object Detection with Star-convex Shapes

fishfeats

Napari plugin for spatial RNA quantification

cellseg-models-pytorch

Encoder-Decoder Cell and Nuclei segmentation models

napari-tmidas

A plugin for batch processing of confocal and whole-slide microscopy images of biological tissues

stardist-napari

StarDist plugin for napari

vitaminp

VitaminP: a vision transformer-assisted multimodal integration network for pathology cell segmentation

cellseg-gsontools

Toolbelt for merging and extracting features from geojson masks.

napari-nuclephaser

A Napari plugin to detect and count nuclei on phase contrast images

prismtoolbox

Toolbox for histopathology image analysis