Nifti Python Packages | PyRank

nibabel

Python package to access a cacophony of neuro-imaging file formats

1.7M 778 286

dcm2niix

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

18K 1K 261

niivue-streamlit

a WebGL2 based medical image viewer. Supports over 30 formats of volumes and meshes.

7K 463 124

med-imagetools

Transparent and reproducible medical image processing pipelines in Python.

4K 60 11

pydcm

The complete DICOM toolkit for Python — every transfer syntax built in, no plugins, NumPy/PyTorch native, one wheel.

3K 1 1

auxiliary

helpful functions for handling biomedical-imaging data in DICOM or NIfTI format

2K 2 3

zarrnii

Package for working with OME-Zarr and NIFTI images in a unified manner, with a focus on spatial transformations

2K 11 4

imio

Loading and saving of image data.

958 10 2

brain2scalp

Map MNI, Talairach or native-space brain coordinates to their nearest scalp entry point

931 5 0

vids-validator

Reference validator for the VIDS (Verified Imaging Dataset Standard) specification

611 0 0

convert-source

Converts and organises source MR image data-sets in accordance with the Brain Imaging Data Structure (BIDS)

515 1 0

nii2dcm

nii2dcm: NIfTI to DICOM creation with Python

475 92 25

segauge

The honest, geometrically-correct, DICOM-native evaluation harness for medical image segmentation.

426 1 0

data-tracking

Extract meta-data from DICOM and NIFTI files

425 4 2

hemispec-toolkit

Hemispheric-Specific Brain Modeling and Analysis Based on Generative Adversarial Networks

359 3 0

pyvoxel

An AI-powered open-source medical image analysis toolbox

317 28 4

erwin

Quantitative MRI toolbox in Python

291 13 1

som

stanford open modules for python

279 8 6

niftiai

Train neural nets on 3D images (e.g. MRIs) 🧠

275 4 0

nekton

A python package for DICOM to NifTi and NifTi to DICOM-SEG and GSPS conversion

264 12 2

batch-niistats

Calculate descriptive statistics for large numbers of 3D .nii files and return the output as a .csv file. Pure python code that works very quickly on all operating systems.

238 4 0

nii2png

A lightweight neuroimaging .nii to .png converter

232 128 36

nii-info

Display NIfTI image information in a tabular format

169 0 0

biswebpython

A Medical Image Analysis Package

136 86 36