Ngs Pipeline Python Packages

pm4ngs

Project Manager for NGS data analysis

solida

SOLIDA is command-line solution that facilitate the reproducibility and portability of NGS pipelines. It can easily organize the deployment, the data management and the execution of a Snakemake based workflow.

cbicall

CBIcall is a configuration-driven framework for reproducible variant calling in large sequencing cohorts, enabling standardized pipelines from FASTQ to analysis-ready VCFs across heterogeneous computing environments.

bio-jtools

Various bioinformatics tools in one package

pycrispr

Pip package for CRISPR-Cas9 screen analysis

mock-fastq-generator

Generates randomly generated fastQ files from a template and upstream sequence.

snipgenie

command line and desktop tool for microbial variant calling