Ngs Analysis Python Packages

bioframe

Genomic interval operations on Pandas DataFrames

37K 196 36

screenpro2

Flexible analysis of high-content CRISPR screening

2K 34 7

viralquest

A user-friendly pipeline for viral diversity analysis and characterization.

1K 16 2

ampligone

A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment

738 20 1

aminoextract

AminoExtract is a tool for translating and extracting amino acid sequences from nucleotide-sequences based on a GFF input

707 1 0

ngs-toolkit

A toolkit for NGS analysis with Python

504 14 4

pm4ngs

Project Manager for NGS data analysis

388 31 10

eastr

Emending Alignment of Spliced Transcript Reads

355 13 2

htseq-clip

a toolset designed for the processing and analysis of eCLIP/iCLIP dataset

256 3 1

cbicall

CBIcall is a configuration-driven framework for reproducible variant calling in large sequencing cohorts, enabling standardized pipelines from FASTQ to analysis-ready VCFs across heterogeneous computing environments.

251 2 0

apobec

NGS data analysis scripts for HBV elimination research group

112 2 1

crispr-cas9

NGS data analysis scripts for HBV elimination research group

103 4 3

mock-fastq-generator

Generates randomly generated fastQ files from a template and upstream sequence.

80 2 0

seqtables

Tools for analyzing NGS sequence data and aligned protein sequences

47 5 2