Ngs Analysis Python Packages

bioframe

Genomic interval operations on Pandas DataFrames

htseq-clip

a toolset designed for the processing and analysis of eCLIP/iCLIP dataset

screenpro2

Flexible analysis of high-content CRISPR screening

aminoextract

Extract amino acid sequences from a fasta file based on a GFF

ampligone

AmpliGone is a tool which accurately removes primer sequences from FastQ NGS reads in an amplicon sequencing experiment

ngs-toolkit

A toolkit for NGS analysis with Python

eastr

Emending Alignment of Spliced Transcript Reads

pm4ngs

Project Manager for NGS data analysis

viralquest

A bioinformatics tool for viral genome analysis and characterization.

apobec

scripts for mutations counting in deep sequencing data

crispr-cas9

script for indels counting in sequencing data

laax

Local Ancestry Analysis in Crossbred Populations

seqtables

Tools for analyzing NGS sequence data and aligned protein sequences