PyRank

Ngs Analysis Python Packages

Python packages with the GitHub topic ngs-analysis. Sorted by relevance, with stars and monthly downloads.
open2c
bioframe

Genomic interval operations on Pandas DataFrames

33K 191 35
EMBL-Hentze-group
htseq-clip

a toolset designed for the processing and analysis of eCLIP/iCLIP dataset

2K 3 1
ArcInstitute
screenpro2

Flexible analysis of high-content CRISPR screening

2K 32 7
RIVM-bioinformatics
aminoextract

AminoExtract is a tool for translating and extracting amino acid sequences from nucleotide-sequences based on a GFF input

977 1 0
RIVM-bioinformatics
ampligone

A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment

950 20 1
afrendeiro
ngs-toolkit

A toolkit for NGS analysis with Python

684 14 4
ncbi
pm4ngs

Project Manager for NGS data analysis

505 31 10
ishinder
eastr

Emending Alignment of Spliced Transcript Reads

394 12 1
gabrielvpina
viralquest

A bioinformatics tool for viral genome analysis and characterization.

230 13 1
babinyurii
apobec

NGS data analysis scripts for HBV elimination research group

212 2 1
babinyurii
crispr-cas9

NGS data analysis scripts for HBV elimination research group

175 4 3
kkokay07
laax

Repository for population genetics and quantitative genetics metrics implementarion and visualization

86 2 0
cchrysostomou
seqtables

Package for efficient analysis of next generation sequencing amplicon data using numpy and dataframes

71 5 2