Nextflow Python Packages

pytest-workflow

Configure workflow/pipeline tests using yaml files.

nf-core

Python package with helper tools for the nf-core community.

nextflowpy

Python wrapper around Nextflow.

cloudfit-core

Cloud-agnostic machine type scoring engine for bioinformatics workloads

workflow-clinic

GA4GH Workflow Clinic

monsda

MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis

quantms-utils

A python library with scripts and helpers classes for quantms workflow

micone

The Microbial Co-occurrence Network Explorer

flowcraft

FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. :whale::package:

assemblerflow

FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. :whale::package:

pybrave

BRAVE (Bioinformatics Reactive Analysis and Visualization Engine) bridges the gap between engineering and scientific research

metasheet-guard

Experimental-design-aware quality control for sequencing analysis sample sheets.

covviz

Multi-sample coverage browser

nflaunch

nflaunch is a command-line tool to simplify launching Nextflow pipelines on cloud batch services (GCP Batch)

py-nf

Python library to execute batches of jobs using nextflow.

sceptr-profiling

Statistical Characterisation of Expression Profiles in Transcriptomes

nf-python-plugin

Nextflow plugin enabling seamless integration between Nextflow and Python 🧪