Nextflow Python Packages

pytest-workflow

Configure workflow/pipeline tests using yaml files.

nf-core

Python package with helper tools for the nf-core community.

nextflowpy

Python wrapper around Nextflow.

monsda

MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis

quantms-utils

Python scripts and helpers for the quantMS workflow

micone

The Microbial Co-occurrence Network Explorer

flowcraft

FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. :whale::package:

covviz

Multi-sample coverage browser

nflaunch

nflaunch is a command-line tool to simplify launching Nextflow pipelines on cloud batch services (GCP Batch)

assemblerflow

FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. :whale::package:

pybrave

Bioinformatics Reactive Analysis and Visualization Engine

sceptr-profiling

Continuous enrichment profiling for transcriptomes. Characterise how functional programmes are distributed across the expression gradient, with built-in significance testing for single samples. Great for non-model organisms, clinical isolates, and unreplicated datasets.

py-nf

Python library to execute batches of jobs using nextflow.

nf-python-plugin

Nextflow plugin enabling seamless integration between Nextflow and Python 🧪