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Nextflow Python Packages

Python packages with the GitHub topic nextflow. Sorted by relevance, with stars and monthly downloads.
LUMC
pytest-workflow

Configure workflow/pipeline tests using yaml files.

57K 69 10
nf-core
nf-core

Python package with helper tools for the nf-core community.

39K 307 242
goodwright
nextflowpy

Python wrapper around Nextflow.

5K 62 7
jfallmann
monsda

MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis

2K 12 3
bigbio
quantms-utils

Python scripts and helpers for the quantMS workflow

1K 6 5
segrelab
micone

The Microbial Co-occurrence Network Explorer

664 21 4
assemblerflow
flowcraft

FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. :whale::package:

535 249 45
brwnj
covviz

Multi-sample coverage browser

491 58 7
rodjc
nflaunch

nflaunch is a command-line tool to simplify launching Nextflow pipelines on cloud batch services (GCP Batch)

474 5 0
ODiogoSilva
assemblerflow

FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. :whale::package:

392 249 45
pybrave
pybrave

Bioinformatics Reactive Analysis and Visualization Engine

368 4 0
jsmccabe1
sceptr-profiling

Continuous enrichment profiling for transcriptomes. Characterise how functional programmes are distributed across the expression gradient, with built-in significance testing for single samples. Great for non-model organisms, clinical isolates, and unreplicated datasets.

350 5 0
kirilenkobm
py-nf

Python library to execute batches of jobs using nextflow.

145 5 1
royjacobson
nf-python-plugin

Nextflow plugin enabling seamless integration between Nextflow and Python 🧪

108 9 0
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