PyRank
  • Search
  • PyPI
  • GitHub
  • Insights
  • Compare
  • Advisories
  • Ecosystem
  • About

Nextflow Pipeline Python Packages

Python packages with the GitHub topic nextflow-pipeline. Sorted by monthly downloads, with stars and forks.
CNAG-Biomedical-Informatics
cbicall

CBIcall is a configuration-driven framework for reproducible variant calling in large sequencing cohorts, enabling standardized pipelines from FASTQ to analysis-ready VCFs across heterogeneous computing environments.

251 2 0
kirilenkobm
py-nf

Python library to execute batches of jobs using nextflow.

90 5 1
jsmccabe1
sceptr-profiling

Continuous enrichment profiling for transcriptomes. Characterise how functional programmes are distributed across the expression gradient, with built-in significance testing for single samples. Great for non-model organisms, clinical isolates, and unreplicated datasets.

56 6 0
    • Original data from PyPI, GitHub, and OSV; downloads served through ClickHouse
    • Sources & methodology