Newick Python Packages

figtreekit

Programmatic styling of phylogenetic trees for FigTree visualization

bionick

Software for manipulating Newick strings and adding phylogenies to Matplotlib visuals.

phylo3d-trait

Interactive 3D phylogenetic tree visualizer for continuous trait evolution and supplied ancestral-state estimates; standalone WebGL2 HTML.

branchsnv

Dependency-free identification of branch-associated SNVs from rooted phylogenies and transposed NEXUS matrices.

pyitol

A Python CLI tool for iTOL phylogenetic tree visualization automation

splitp

Python package that implements split- and rank-based tools for inferring phylogenies, such as flattenings and subflattenings.

treemaker

A Python library for creating a Newick formatted tree from a set of classification strings