Neuroscience Python Packages

mne

MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

pynwb

A Python API for working with Neurodata stored in the NWB Format

antropy

AntroPy: entropy and complexity of (EEG) time-series in Python

braindecode

Deep learning software to decode EEG, ECG or MEG signals

edt

Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

mne-bids

MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

specparam

Parameterizing neural power spectra into periodic & aperiodic components.

fooof

Parameterizing neural power spectra into periodic & aperiodic components.

brian2

Brian is a free, open source simulator for spiking neural networks.

efel

Electrophys Feature Extraction Library

spikeinterface

A Python-based module for creating flexible and robust spike sorting pipelines.

elephant

Elephant is the Electrophysiology Analysis Toolkit

psychopy

For running psychology and neuroscience experiments

neuron-nightly

NEURON Simulator

neuron

NEURON Simulator

pyprep

PyPREP: A Python implementation of the Preprocessing Pipeline (PREP) for EEG data

modeci-mdf

This repository contains the source for the MDF specification and Python API

dcm2niix

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

moabb

Mother of All BCI Benchmarks

mne-icalabel

Automatic labeling of ICA components in Python.

pymoose

C++ basecode and python scripting interface

snntorch

Deep and online learning with spiking neural networks in Python

pyabf

pyABF is a Python package for reading electrophysiology data from Axon Binary Format (ABF) files

brainflow

BrainFlow is a library intended to obtain, parse and analyze EEG, EMG, ECG and other kinds of data from biosensors