Neuroscience Python Packages

mne

MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

pynwb

A Python API for working with Neurodata stored in the NWB Format

antropy

AntroPy: entropy and complexity of (EEG) time-series in Python

mne-bids

MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

pyprep

PyPREP: A Python implementation of the Preprocessing Pipeline (PREP) for EEG data

braindecode

Deep learning software to decode EEG, ECG or MEG signals

edt

Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

efel

Electrophys Feature Extraction Library

snntorch

Deep and online learning with spiking neural networks in Python

neuron

NEURON Simulator

brian2

Brian is a free, open source simulator for spiking neural networks.

mne-icalabel

Automatic labeling of ICA components in Python.

meegkit

🔧🧠 MEEGkit: MEG & EEG processing toolkit in Python

moabb

Mother of All BCI Benchmarks

spikeinterface

A Python-based module for creating flexible and robust spike sorting pipelines.

brainflow

BrainFlow is a library intended to obtain, parse and analyze EEG, EMG, ECG and other kinds of data from biosensors

neuralset

Python suite for neuroscience research across all modalities.

neuraltrain

Python suite for neuroscience research across all modalities.

specparam

Parameterizing neural power spectra into periodic & aperiodic components.

elephant

Elephant is the Electrophysiology Analysis Toolkit

eegdash

EEG-DaSh: an open data, tool, and compute resource. a Python library and catalog for 700+ BIDS-first EEG, MEG, fNIRS, EMG, and iEEG datasets, ML-ready via PyTorch

psychopy

For running psychology and neuroscience experiments

modeci-mdf

This repository contains the source for the MDF specification and Python API

bluepyopt

Blue Brain Python Optimisation Library