Neuroscience Python Packages

mne

MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

pynwb

A Python API for working with Neurodata stored in the NWB Format

antropy

AntroPy: entropy and complexity of (EEG) time-series in Python

edt

Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

mne-bids

MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

efel

Electrophys Feature Extraction Library

braindecode

Deep learning software to decode EEG, ECG or MEG signals

neuron

NEURON Simulator

brian2

Brian is a free, open source simulator for spiking neural networks.

spikeinterface

A Python-based module for creating flexible and robust spike sorting pipelines.

pyprep

PyPREP: A Python implementation of the Preprocessing Pipeline (PREP) for EEG data

elephant

Elephant is the Electrophysiology Analysis Toolkit

moabb

Mother of All BCI Benchmarks

brainflow

BrainFlow is a library intended to obtain, parse and analyze EEG, EMG, ECG and other kinds of data from biosensors

mne-icalabel

Automatic labeling of ICA components in Python.

snntorch

Deep and online learning with spiking neural networks in Python

meegkit

🔧🧠 MEEGkit: MEG & EEG processing toolkit in Python

neuron-nightly

NEURON Simulator

modeci-mdf

This repository contains the source for the MDF specification and Python API

specparam

Parameterizing neural power spectra into periodic & aperiodic components.

psychopy

For running psychology and neuroscience experiments

eegdash

EEG-DaSh: an open data, tool, and compute resource. a Python library and catalog for 700+ BIDS-first EEG, MEG, fNIRS, EMG, and iEEG datasets, ML-ready via PyTorch

dcm2niix

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

neuralset

Python suite for neuroscience research across all modalities.