Neuroscience Methods Python Packages

cebra

Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA

10K 1K 95

neurolib

Easy whole-brain modeling for computational neuroscientists 🧠💻👩🏿‍🔬

3K 473 96

rastermap

a visualization method for neural data

3K 248 53

naplib

Tools and functions for neural data processing and analysis in python

2K 29 9

brain-pred-toolbox

The Brain Predictability toolbox (BPt) is a Python based machine learning library designed to work with a range of neuroimaging data. Warning: Not actively maintained as of 11/30/22.

947 11 7

asltk

A quick to use library to process images for MRI Arterial Spin Labeling imaging protocols.

939 5 2

cubids

Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.

718 30 13

espresso-neuro

Electrophysiology Suite for Preprocessing, Recording, Event detection, and Spectral & Source-space Operations (espresso)

587 1 0

derotation

Derotate images acquired via multiphoton calcium imaging

504 17 3

axon-synthesis

A package to synthesize artificial axons

477 3 1

natmeeg

A library to process M/EEG data with a set of utility functions with a framework focused on continuous recordings and naturalistic stimuli.

446 15 4

photon-mosaic

Automating calcium imaging analysis

364 20 4

pygpso

Gaussian-Processes Surrogate Optimisation in python

202 18 1

hnccorr

HNCcorr algorithm for neuron identification in calcium imaging datasets.

187 11 3

scikit-neuromsi

Implementation of multisensory integration models in Python

136 7 2

cubids-bond-fork

BIDS On Disk Editor

134 30 13

pynamicgain

Creating Dynamic Gain inputs for Python-based patch clamp setups.

134 0 0

stiminterp

Photostimulation artifact removal via interpolation

83 0 0

braph

Brain Analysis using Graph Theory

56 12 2

nc-mcm-visualizer

This is a toolbox to analyze and interpret whole brain imaging data. It attempts to implement the NC-MCM framework in an easy access Python package. It was created in the process of a MasterThesis.

13 0 0

ncmcm

This is a toolbox to analyze and interpret whole brain imaging data. It attempts to implement the NC-MCM framework in an easy access Python package. It was created in the process of a MasterThesis.

1 0 0