Neuroscience Methods Python Packages

rastermap

a visualization method for neural data

cebra

Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA

stiminterp

Remove photostimulation artefacts from images acquired via multiphoton calcium imaging

natmeeg

Library for processing and analyizing M/EEG data as recorded with naturalistic stimuli.

neurolib

Easy whole-brain modeling for computational neuroscientists 🧠💻👩🏿‍🔬

asltk

The Arterial Spin Labeling (ASL) toolkit offer a general imaging processing api for ASL MRI techniques.

derotation

Derotate images acquired via multiphoton calcium imaging

naplib

Tools and functions for neural data processing and analysis in python

photon-mosaic-pipeline

Automated and reproducible analysis of multiphoton imaging datasets

brain-pred-toolbox

The Brain Predictability toolbox (BPt), is a python based Machine Learning library designed primarily for tabular and neuroimaging specific neuroimaging data but can easily be generalized further.

photon-mosaic

Automated and reproducible analysis of multiphoton imaging datasets

axon-synthesis

A package to synthesize artificial axons

cubids

Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.

spikelab

Python library for agentic spike train analysis of neural electrophysiology data

pygpso

Bayesian optimisation method leveraging Gaussian Processes surrogate

hnccorr

HNCcorr algorithm for cell detection in calcium-imaging.

espresso-neuro

A framework for preprocessing, processing, visualization, event detection, and event curation of high-density time-series signals and multi-channel data streams.

scikit-neuromsi

Implementation of multisensory integration models in Python

cubids-bond-fork

BIDS On Disk Editor

pynamicgain

Creating Dynamic Gain inputs for Python-based patch clamp setups.

braph

No description available

ncmcm

This is a toolbox to analyze and interpret whole brain imaging data. It attempts to implement the NC-MCM framework in an easy access Python package. It was created in the process of a MasterThesis.

nc-mcm-visualizer

This is a toolbox to analyze and interpret whole brain imaging data. It attempts to implement the NC-MCM framework in an easy access Python package. It was created in the process of a MasterThesis.