Neurons Python Packages

efel

Electrophys Feature Extraction Library

neurom

Neuronal Morphology Analysis Tool

skeletor

Extraction of 3D skeletons from meshes.

bluepyopt

Blue Brain Python Optimisation Library

navis

Python library for analysis of neuroanatomical data.

navis-fastcore

Reimplementation of navis functions in Rust.

bindsnet

Simulation of spiking neural networks (SNNs) using PyTorch.

nest-simulator

The NEST simulator

ratinabox

A python package for simulating movement and spatial cell types (e.g. place cells, grid cells) in continuous environments.

pymoose-development-jayesh

C++ basecode and python scripting interface

flika

An interactive image processing program for biologists written in Python.

moose-core

C++ basecode and python scripting interface

brayns

Visualizer for large-scale and interactive ray-tracing of neurons

sparse-cubes

Mesh generation, skeletonization, voxelization of sparse 3D data.

replay-classification

State space models for categorization of replay content from multiunit spiking activity. Deng et al. 2016

bigclust2

Exploration and Analysis of Connectomics Data

cd-network

Analytical derivation of the stochastic output of coincidence detection (CD) neurons

neurox

A Python library that encapsulates various methods for neuron interpretation and analysis in Deep NLP models.

supercluster

a novel object-oriented approach to the artificial neural networks inspired by synaptic plasticity between biological neurons

time-rescale

Tools for evaluating the goodness of fit of a point process model via the time rescaling theorem

swc2vtk

swc to vtk converter for visualization of neuron and neural circuit simulation in ParaView

neurodatasets

The neurodatasets package provides a curated collection of neuroscience and brain-related datasets for data analysis, statistical modeling, and machine learning research. It includes datasets related to biomedical voice recordings, MRI brain imaging, Alzheimer's and Parkinson's disease biomarkers, epilepsy seizures, ADHD symptoms

plexus

a novel object-oriented approach to the artificial neural networks inspired by synaptic plasticity between biological neurons

nest-on-square-wheels

The NEST simulator