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Neurons Python Packages

Python packages with the GitHub topic neurons. Sorted by relevance, with stars and monthly downloads.
openbraininstitute
efel

Electrophys Feature Extraction Library

55K 9 0
navis-org
skeletor

Extraction of 3D skeletons from meshes.

26K 256 29
openbraininstitute
bluepyopt

Blue Brain Python Optimisation Library

16K 9 0
BlueBrain
neurom

Neuronal Morphology Analysis Tool

11K 108 58
nest
nest-simulator

The NEST simulator

7K 644 400
navis-org
navis

Python library for analysis of neuroanatomical data.

4K 115 36
schlegelp
navis-fastcore

Reimplementation of navis functions in Rust.

1K 2 0
RatInABox-Lab
ratinabox

A python package for simulating movement and spatial cell types (e.g. place cells, grid cells) in continuous environments.

1K 255 52
Eden-Kramer-Lab
replay-classification

State space models for categorization of replay content from multiunit spiking activity. Deng et al. 2016

966 7 6
flika-org
flika

An interactive image processing program for biologists written in Python.

901 26 2
BlueBrain
brayns

Brayns Python API

898 305 47
BhallaLab
pymoose-development-jayesh

C++ basecode and python scripting interface

777 19 37
BhallaLab
moose-core

C++ basecode and python scripting interface

483 19 37
lightbluetitan
neurodatasets

The neurodatasets package provides a curated collection of neuroscience and brain-related datasets for data analysis, statistical modeling, and machine learning research. It includes datasets related to biomedical voice recordings, MRI brain imaging, Alzheimer's and Parkinson's disease biomarkers, epilepsy seizures, ADHD symptoms

482 3 0
mertyildiran
supercluster

a novel object-oriented approach to the artificial neural networks inspired by synaptic plasticity between biological neurons

314 12 6
nuniz
cd-network

Analytical derivation of the stochastic output of coincidence detection (CD) neurons

303 3 0
fdalvi
neurox

A Python library that encapsulates various methods for neuron interpretation and analysis in Deep NLP models.

231 108 27
mertyildiran
plexus

Plexus is exceptionally bio-inspired, a revolutionary approach to the artificial neural networks

184 12 6
Eden-Kramer-Lab
time-rescale

Tools for evaluating the goodness of fit of a point process model via the time rescaling theorem

172 3 4
DaisukeMiyamoto
swc2vtk

swc to vtk converter for visualization of neuron and neural circuit simulation in ParaView

141 12 4
navis-org
sparse-cubes

Mesh generation from sparse matrices

71 23 1
nest
nest-on-square-wheels

Python bindings for NEST

64 644 400
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