Neuron Python Packages

neuron

NEURON Simulator

neuron-nightly

NEURON Simulator

bluecellulab

Biologically detailed neural network simulations and analysis API

pyabf

pyABF is a Python package for reading electrophysiology data from Axon Binary Format (ABF) files

bluepyemodel

Blue Brain Python Electrical Modeling Pipeline

bmtool

A collection of scripts to assist with developing networks in BMTK (https://github.com/AllenInstitute/bmtk)

swcgeom

Neuron geometry library for swc format.

emodel-generalisation

Generalisation of electrical models of neurons with MCMC

python-catmaid

Python library to interface with CATMAID servers. Fully interoperable with navis.

bmtk

Brain Modeling Toolkit

biosimulations-modeldb

Command-line program and scheduled GitHub action for publishing the ModelDB model repository to BioSimulations

neuron-gpu

NEURON Simulator

dendrotweaks

Python toolbox for creating and validating single-cell neuronal models with active dendrites.

nrn-glia

NMODL asset manager

dbbs-mod-collection

NMODL asset manager

aptx-neuron

This repository offers a Python code for the PyTorch implementation of the APTx Neuron, as introduced in the paper "APTx Neuron: A Unified Trainable Neuron Architecture Integrating Activation and Computation".

bioexplorer

The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration

nmodl-preprocessor

Optimize NMODL files for the NEURON simulator

stefano-models

NMODL asset manager

sanpy-ephys

Whole cell current-clamp analysis.

cd-network

A framework designed to calculate the output of neurons based on non-homogeneous Poisson processes and rate statistic calculations

neuron-gpu-nightly

NEURON Simulator

neurodriver

LPU class with support for various neuron and synapse models

pyrho

Fit and characterise rhodopsin photocurrents