Neuroinformatics Python Packages

eegdash

EEG-DaSh: an open data, tool, and compute resource. a Python library and catalog for 700+ BIDS-first EEG, MEG, fNIRS, EMG, and iEEG datasets, ML-ready via PyTorch

sorn

PyPi Package of Self-Organizing Recurrent Neural Networks (SORN) and Neuro-robotics using OpenAI Gym

bmtk

Brain Modeling Toolkit

cubids

Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.

pyradigm

Research data management in biomedical and machine learning applications

spykesim

Extended edit similarity measurement for high dimensional discrete-time series signal (e.g., multi-unit spike-train).

bids-events

A package to export events using log files from presentation software.

cascade-mea

CASCADE (Criticality Avalanche Spike Cross-platform Analysis Detection Engine) is a unified Python pipeline for MEA electrophysiology analysis. Supports multiple manufacturers, detects neuronal avalanches, and computes criticality metrics including DCC, branching ratio, and shape collapse.

neuronunit

A package for data-driven validation of neuron and ion channel models using SciUnit

cubids-bond-fork

Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.