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Network Biology Python Packages

Python packages with the GitHub topic network-biology. Sorted by relevance, with stars and monthly downloads.
aplbrain
grandiso

Performant, pure-Python subgraph isomorphism and monomorphism search (aka "motif search")

9K 66 10
stracquadaniolab
pygna

A Python package for gene network analysis

937 33 6
elife-asu
neet

Simulating and analyzing dynamical network models

341 6 10
amberbiology
scribl

Semantic Capture of Relationships In Biological Literature (scribl)

227 5 1
multipaths
diffupy

A Python package for network analysis through diffusion label propagation algorithms

148 7 2
krishnanlab
obnb

A Python toolkit for setting up benchmarking dataset using biomedical networks

135 21 2
multipaths
diffupath

A Python package for analyzing harmonized biological networks through diffusion algorithms

120 7 1
    • Data from PyPI, GitHub, ClickHouse, and BigQuery