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Network Biology Python Packages

Python packages with the GitHub topic network-biology. Sorted by relevance, with stars and monthly downloads.
aplbrain
grandiso

Performant, pure-Python subgraph isomorphism and monomorphism search (aka "motif search")

8K 66 10
stracquadaniolab
pygna

Geneset Network Analysis

688 33 6
elife-asu
neet

Simulating and analyzing dynamical network models

477 6 10
amberbiology
scribl

A system for the semantic capture of relationships in biological literature

353 5 1
multipaths
diffupy

A Python package for network analysis through diffusion label propagation algorithms

206 7 1
multipaths
diffupath

Compute diffusion scores over networks from biological databases

161 7 1
krishnanlab
obnb

A Python toolkit for setting up benchmarking dataset using biomedical networks

124 22 2
    • Data from PyPI, GitHub, ClickHouse, and BigQuery