network-biology
Performant, pure-Python subgraph isomorphism and monomorphism search (aka "motif search")
DRaCOoN: data-driven differential co-expression and differential regulatory network inference from transcriptomics data across two conditions (BMC Bioinformatics 2025)
A Python package for gene network analysis
Semantic Capture of Relationships In Biological Literature (scribl)
Simulating and analyzing dynamical network models
A Python package for network analysis through diffusion label propagation algorithms
A Python package for analyzing harmonized biological networks through diffusion algorithms
A Python toolkit for setting up benchmarking dataset using biomedical networks
