Ncbi Taxonomy Python Packages

taxadb

:hatching_chick: locally query the ncbi taxonomy

taxidtools

Python library to deal with taxonomic IDs and lineages from the NCBI's Taxdump files

ncbitax2lin

A tool that converts NCBI taxonomy dump into lineages

fastsubtrees

Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree.

ntmirror

Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree.

ntdownload

Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree.

genomes-attributes-viewer

Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree.

rrat

Ribosomal RNA Allele Tree

ntsubtree

Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree.

flextaxd

FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )

taxadb2

local query the ncbi taxonomy

taxmagick

Tools for managing ncbi taxonomic data