Ncbi Taxonomy Python Packages

taxadb

:hatching_chick: locally query the ncbi taxonomy

fastsubtrees

Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree.

ncbitax2lin

🐞 Convert NCBI taxonomy dump into lineages

taxidtools

A Python Toolkit for Taxonomy

ntmirror

Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree.

genomes-attributes-viewer

Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree.

ntdownload

Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree.

ntsubtree

Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree.

rrat

Ribosomal RNA Allele Tree

flextaxd

FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )

taxadb2

local query the ncbi taxonomy

taxmagick

Tools for managing ncbi taxonomic data