Ncbi Taxonomy Python Packages

taxadb

:hatching_chick: locally query the ncbi taxonomy

taxidtools

Python library to deal with taxonomic IDs and lineages from the NCBI's Taxdump files

fastsubtrees

Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree.

ncbitax2lin

🐞 Convert NCBI taxonomy dump into lineages

ntmirror

Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree.

ntdownload

Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree.

genomes-attributes-viewer

Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree.

rrat

Ribosomal RNA Allele Tree

ntsubtree

Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree.

taxadb2

local query the ncbi taxonomy

flextaxd

FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )

taxmagick

Tools for managing ncbi taxonomic data